Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2166 ATGTTGAGTTCCCAACGCTTTAAAACCCATATTATCTATCTGAAGGGACTCATAAGAGCATCGATTCCAACCCCAGAAGCCAATCCATTTGCATTAACACTCTCTTTGAAATACAGCTCCATCACTTCAGAGCGACACTCATTCACCGTTTCATACCTCATTAACAATTGCGCCTTCTCGCCAGAAACTGCTCTCAAGGCTTCCAAGCTTGTTCGATTTGAGACAGCCGAAAAGCCCGATTCAGTAATCGCCTTCTTCAGAAACAACGGATTCTCCCACTCTCAGATAAATAGCATTATTAGAAGGGCACCCAAGGTGCTTACATGCAACCCCCACAAAAGGGTTTTTCCAAAGTTTGAATTTTTAATCTCCAACGGTCTTACCAAATCTGACATTGTTCAACTGGTGACTGGGTGCCCTAGATTCCTCTCTTCAAGCCTCGAAAATTGCATAGTCCCTTCCTATGAATTGGTGAGAAGGTTCCTTCAATCTGATAAGGAAATTATTGGTTGTATACTCGCTGGTAGAAATTTCCTATCTTATAAACTTGTCGAACGAAATGTGAGATTGTTGCTTGAAGATGGAGTCTCTGACTCCAACATCACCTATTTGTTACGAAGAAGACCTACTATTCTCTTGACCGGTGACATGAGGAGGGCCTTGGATGAAGTTAAGGAAATGGGGTTTGATCCCTCTAAGGTAAGCTTTGGAATGGCATTGCATGCCAAAAAGGGGATTTCCAAATCTAGGTGGGATGCAAAAGTTGATGCCTTTAAGAGCTGGGGTTGGTCTGAAGAATTGGTTCTTTCTGCGTTTAGGCAGGCGCCCATGGTTATGTTAACATCGAAGGATAAGATTAATGAGGTGATGAAATTTTGGGTCAATCAATTAGGTTGGAACTCTTTGGCCCTTGCCCAAAGGCCTGCAATTTTTGGATATAGTTTGGGAAAAAGGATTGTTCCGAGGGGTTTGGTTGTGAAGCATCTGATTGCAAAAGGTTTGAGAAGAAAGAATGCCAGCTTGTTTAACCCATTTACTATTCCTGACAACCTGTTTCTTGAAAATTTTGTGAAATGTTTTGAGGAGGAAAGTCATCAATTATTAGAGCTATACCAGGAAAAGATGAGTGGTGGTTGGTCATTGAGTTTAGAAAGGGACTGTAGATGCTTTCCTGTGATCCCTGCAAAAGGGTCTTGGTTTGAATTTTCTCTCAAAAGGTCTGGTTCCGAAATAGTTGACCTAGCGATTACGTACCGAGGAGTACTGGCTCCAAGACTGAAGAATCATATAGTCCCAACCTATGAGTTGGCCAAAACCCCAAGGCCGATCCCCATTAGCTTAATTTCCTCATTGCCCTCAAAGTCACGGCCTCTCCCTTTTCATTCCGCCTCCCTTCTCTACATTTCCCATGAGTTCCACTCAATTTTCACTCAGTATAACTGTTTCTCCCGGAAATCGCTTCACTTCACTGCCCTGATGAGTTGCCTACTCTTCAAATCCCTTCTTCTCCGTCCGGAAGGAATCATAAGAATACCGTTTCCAACCCCAAAATGGACTCCTTTTCTATCAACATTCTCTTGGAAATCCAGCTCCATCACTTCAGAGCAACATTCATTCACTGTTTCATACCTCATAAACAATCGTGGGTTCTCACCAGAAACTGCTCTCAAGGCCTCCAAGTTAGTTCAATTCGAGACCGCTGAAAAGCCCGATTCAGTTATCGCCTTCTTCAGAAACAACGGATTCTCCAACTATCAGATAAATAACATTGTTAGAAGTGCACCCAATGTGCTTACCTGCGATCCCCACAAAAGGGTTTTGCCAAAGATTGAATTTTTACACTCTAAAGTTACTTCCATTCCAGACGTTGTTGAATTGGTGAATAGGAGCCCCAGAATCTTCTACGCAAGCCTCGAGAAAAGCACAATCCCTACCTATGAATGCGTGAGAAGGTACCTTAAATCTGATAAGGAAACCGTTTATTCTATTCTCGCTTGTCGACATTTCTTTGGCACTGACCGTGTTGTACAAAATGTGAGATTATTGCGTGATGTTGGAGCCACTGATTCAAACATTTCCCAGTTGTTACGTAGAAGGCTTTCTGTGATATTGTCTTCTAACATGAGGGGCGTCGTGGATGAAGTTACGGAAATGGGTTTTGATCCTTCCAAGTCAAATTTTATGATTGCATTGCTAGCCAAAAAGGTTATTCCCAAATCCCGGTGGAATGCAAAAGTTAACGCCCTCAAGAGTTGGGGTTGGTCTGAAGAATTGATTCTTCATGTGTTTAAGAGAGCCCCTTTAATCATGTTATCATCTGAGGGTAAAATTAATAAGGTGATGGGATTTTGGGTTAATCAGTTAGGTTGGAACTCTTTGGCCATTGCTAAGAAGCCTGAGATTTTTGGATTTAGTTTGGAGAAAAGGATCATTCCAAGGGCTTTTGTTGTCCAGTATCTACTTGCAAAAGGTTTGAGAAAAGAGAGTGCCAGCCTGCTTACCCCATTTGCGGTTTCTGAAACGGTGTTTCTTGAGAAATATGTGAAATCTTTTGAGGAGGACACGTGTCAATTATTGAAGCTGTACCAGGGGAAAATGAGTTCTTAA 2607 0.4216 MLSSQRFKTHIIYLKGLIRASIPTPEANPFALTLSLKYSSITSERHSFTVSYLINNCAFSPETALKASKLVRFETAEKPDSVIAFFRNNGFSHSQINSIIRRAPKVLTCNPHKRVFPKFEFLISNGLTKSDIVQLVTGCPRFLSSSLENCIVPSYELVRRFLQSDKEIIGCILAGRNFLSYKLVERNVRLLLEDGVSDSNITYLLRRRPTILLTGDMRRALDEVKEMGFDPSKVSFGMALHAKKGISKSRWDAKVDAFKSWGWSEELVLSAFRQAPMVMLTSKDKINEVMKFWVNQLGWNSLALAQRPAIFGYSLGKRIVPRGLVVKHLIAKGLRRKNASLFNPFTIPDNLFLENFVKCFEEESHQLLELYQEKMSGGWSLSLERDCRCFPVIPAKGSWFEFSLKRSGSEIVDLAITYRGVLAPRLKNHIVPTYELAKTPRPIPISLISSLPSKSRPLPFHSASLLYISHEFHSIFTQYNCFSRKSLHFTALMSCLLFKSLLLRPEGIIRIPFPTPKWTPFLSTFSWKSSSITSEQHSFTVSYLINNRGFSPETALKASKLVQFETAEKPDSVIAFFRNNGFSNYQINNIVRSAPNVLTCDPHKRVLPKIEFLHSKVTSIPDVVELVNRSPRIFYASLEKSTIPTYECVRRYLKSDKETVYSILACRHFFGTDRVVQNVRLLRDVGATDSNISQLLRRRLSVILSSNMRGVVDEVTEMGFDPSKSNFMIALLAKKVIPKSRWNAKVNALKSWGWSEELILHVFKRAPLIMLSSEGKINKVMGFWVNQLGWNSLAIAKKPEIFGFSLEKRIIPRAFVVQYLLAKGLRKESASLLTPFAVSETVFLEKYVKSFEEDTCQLLKLYQGKMSS* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2166 868 Gene3D Transcription termination factor 3, mitochondrial 164 369 IPR038538 -
Apr1g2166 868 Gene3D Transcription termination factor 3, mitochondrial 662 857 IPR038538 -
Apr1g2166 868 PANTHER CGI-12 PROTEIN-RELATED 29 377 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 PANTHER CGI-12 PROTEIN-RELATED 523 867 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 660 688 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 760 791 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 588 619 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 624 656 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 692 721 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 SMART mt_12 792 826 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 Pfam mTERF 575 779 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 Pfam mTERF 744 843 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 Pfam mTERF 182 352 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 Pfam mTERF 84 286 IPR003690 GO:0003690|GO:0006355
Apr1g2166 868 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 523 867 - -
Apr1g2166 868 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2166 Apr-Chr1 31126070 31133192 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr1g2166 mTERF 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2166 K15032 - gmx:102666739 439.113