Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2165 ATGTTGAGTTCCCAACGCTTTAAAACCCATCTTCTCTACTTGAAGGGACTCATAAGAGCACCGTTTCCAACCCCAAAAGCGAATCCATTTGCATTAACACTCTCTTTGAAATACAGCTCCATCACTTCAGAGCAACACTCATTCACCGTTTCATACCTCATTAACAATTGCGCCTTCTCGCCAGAAACTGCTCTCAAGGCTTCCAAGCTTGTTCGATTTGAGACCGCCGAAAAGCCCGATTCAGTAATCGCCTTCTTCAGAAACAACGGATTCTCCCACTCTCAGATAAATAACATTGTTAGAAGAGTACCCAATTTGCTTACATGCAACCCCCACAAAAGGGTTTTTCCAAAGTTTGAATTTTTAACCTCCAACGGTCTTCCCAAATCTGACATTGTTCGACTGGTGACTGGGTGCCCTGGATTCCTATCTTCAAGCCTCGAAAATTGCATAGTCCCTTCATACAAATTGGTGAGAAGGTTCCTTCAATCTGATAAGGAAGTTATTGGTCGTATACTCGCTGGTAGAAATTTCCTATCTTATAAACTTGCCAAACAAAATGTGAGATTGTTGCTTGAAGATGGAGGAGTCTCTGACTCCAACATCACCTATTTGTTACGAAGAAGACCTACTATTCTCTTGACCGGTGACATGAGGAGGGCCTTGGATGAAGTTAAGGAAATGGGGTTTGATCCCTCTAAGTTAAGCTTTGGAATGGCATTGCTTGCCAAAAAGGGGATTTCCAAATCTAGGTGGGATGCAAAAGTTGATGCCTTTAAGAGCTGGGGTTGGTCTGAAGAATTGGTTCTTTCTGCGTTTAAGCAGGCACCCATGGTTATGTTAACATCGAAGGATAAGATTAATGAGGTGATGAAATTTTGGGTCAATCAATTAGGTTGGAACTCTTTGGCCCTTGCCAAAGGGCCTGTAGTTTTTGGATATAATTTAGGGAAAAGAATTGTTCCGAGGGGTTTGGTTGTGCAGCATCTGATTGCAAAAGGTTTGAGAAAAAAGAATGCCAGCTTGTTTGTCCCATTTATTATTCCTGAAAACCTGTTTTTTGAAAAGTTTGTGAAATGTTTTGAGGAGGAAAGTCATCAATTATTAAAGCTATACCAAGAATCGATGGGTGTTTAA 1137 0.4116 MLSSQRFKTHLLYLKGLIRAPFPTPKANPFALTLSLKYSSITSEQHSFTVSYLINNCAFSPETALKASKLVRFETAEKPDSVIAFFRNNGFSHSQINNIVRRVPNLLTCNPHKRVFPKFEFLTSNGLPKSDIVRLVTGCPGFLSSSLENCIVPSYKLVRRFLQSDKEVIGRILAGRNFLSYKLAKQNVRLLLEDGGVSDSNITYLLRRRPTILLTGDMRRALDEVKEMGFDPSKLSFGMALLAKKGISKSRWDAKVDAFKSWGWSEELVLSAFKQAPMVMLTSKDKINEVMKFWVNQLGWNSLALAKGPVVFGYNLGKRIVPRGLVVQHLIAKGLRKKNASLFVPFIIPENLFFEKFVKCFEEESHQLLKLYQESMGV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2165 378 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 377 - -
Apr1g2165 378 Gene3D Transcription termination factor 3, mitochondrial 56 236 IPR038538 -
Apr1g2165 378 PANTHER CGI-12 PROTEIN-RELATED 19 377 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 Pfam mTERF 84 228 IPR003690 GO:0003690|GO:0006355
Apr1g2165 378 Pfam mTERF 248 342 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2165 Apr-Chr1 31120088 31122192 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr1g2165 mTERF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2165 K15032 - gmx:102666739 411.379