Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2154 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATAACTGCTAAGGACCATGCCTCGGTTCAGATTAACATTGGGCATTTGGATGAGAATGGTGTTTACAATGGCCACTTCTCCACTTTTGCTCTCTGTGGCTTCATTCGTGCTCAGGGCGATGCTGACAGTGCACTAGATCGCTTGTGGCTAAAGAAGAAGGTTGAAGTGAAGCAACAGTAG 249 0.4578 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGVYNGHFSTFALCGFIRAQGDADSALDRLWLKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2154 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Apr1g2154 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Apr1g2154 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Apr1g2154 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Apr1g2154 82 Gene3D - 1 81 IPR038579 -
Apr1g2154 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2154 Apr-Chr1 31016436 31017811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2154 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 4.47e-51 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2154 K02971 - gmx:100817753 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2154 1 31016436 31017811 Apr1g2154 1 31016436 31017811 ECH
Apr9g2238 9 30237711 30238866 Apr1g2154 1 31016436 31017811 PCT