Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g2144 | ATGGAAGGTAACAAGGACGAAGCGTTGCGCTGCGTTCGCATCGCCGAGGACGCGATTGCGTCAGGGAACAAAGACCGTGCCCTCAAATTCATCAAAATCGCGCAACGCCTCAACCGCGATTTGCCCCTCGAACCCTTGCTCGCCATGTGCGAACGCCTCGATTCTCAGTCGTCAGCCTCGTCCTCCGACGGAACCTCTTCCTCCGCCAGAGGCAAAACGGCGAACCGTACTTCCCGAAACGACGAGCGTTTTAACGGAGAGAGGAATTACACGGAAGAGAATGTTCAGTTGGTTAGGGAAATTAAGAATAAGAGCGATTACTATGCCATCTTGGGATTAGAGAAGAGTTGTTCTGTTGAAGAGATTAGAAGAGCTTATAGGAAACTGTCGTTGAAAGTTCATCCTGATAAGAACAAGGCACCGGGTTCTGAAGATGCGTTTAAGAAGGTTTCAAAGGCTTTTAAGTGTTTGAGTGATGATGGTTCGAGGAGACAGTATGATCAAACGGGAATGGTTGATGAGTATGAATTTAACCAGCAGAACAGTTTCCGGCGCCGGAGGCGGAGGAGTACTATGGGGCACGATATTTTCGAAGATGAATTTGATCCTGATGAGATATTTAGGGCATTCTTTGGACAATCTGATGTGTTTGGGAGAACTCATATTTATAGGACTCGAGGGATGGGGAATCATCATAGGCATGAGTTTCAGGCTGGAACTGGAGGAGGGAATAATAATATTATGCTGTTGATTCAGCTCTTGCCGTTTTTGATCATTTTGCTGCTTGCCTACTTACCATTTTCGGAGCCGGATTATTCGTTGCAGAAGAATTTCTCGTACCAGATTCCAAAGACCACTGAGCAGCATGGAGTTCAGTTTTTCGTGAAATCGCAGGCGTTTGAGGATAACTATCCGAAGGGAAGTCCTGATCGGGAGGCTATTGAGGACAATGTCATAAAGGATTACAAAAATATGCTGCGGCGTTATTGCCAGGTGGAGATTCAGAGACGGAGTTGGAATAGGAATCTGCCTGTTCCTCATTGTGATAAGCTGCAAAACTTTGCAGTTGTAGCCTGA | 1077 | 0.4643 | MEGNKDEALRCVRIAEDAIASGNKDRALKFIKIAQRLNRDLPLEPLLAMCERLDSQSSASSSDGTSSSARGKTANRTSRNDERFNGERNYTEENVQLVREIKNKSDYYAILGLEKSCSVEEIRRAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRQYDQTGMVDEYEFNQQNSFRRRRRRSTMGHDIFEDEFDPDEIFRAFFGQSDVFGRTHIYRTRGMGNHHRHEFQAGTGGGNNNIMLLIQLLPFLIILLLAYLPFSEPDYSLQKNFSYQIPKTTEQHGVQFFVKSQAFEDNYPKGSPDREAIEDNVIKDYKNMLRRYCQVEIQRRSWNRNLPVPHCDKLQNFAVVA* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g2144 | 358 | Pfam | DnaJ domain | 106 | 167 | IPR001623 | - | |
| Apr1g2144 | 358 | Pfam | Domain of unknown function (DUF1977) | 268 | 338 | IPR015399 | - | |
| Apr1g2144 | 358 | Gene3D | DnaJ domain | 102 | 222 | IPR036869 | - | |
| Apr1g2144 | 358 | CDD | DnaJ | 106 | 159 | IPR001623 | - | |
| Apr1g2144 | 358 | ProSiteProfiles | dnaJ domain profile. | 106 | 170 | IPR001623 | - | |
| Apr1g2144 | 358 | PRINTS | DnaJ domain signature | 108 | 126 | IPR001623 | - | |
| Apr1g2144 | 358 | PRINTS | DnaJ domain signature | 126 | 141 | IPR001623 | - | |
| Apr1g2144 | 358 | PRINTS | DnaJ domain signature | 142 | 162 | IPR001623 | - | |
| Apr1g2144 | 358 | PRINTS | DnaJ domain signature | 162 | 181 | IPR001623 | - | |
| Apr1g2144 | 358 | PANTHER | AT29763P-RELATED | 1 | 356 | - | - | |
| Apr1g2144 | 358 | PANTHER | CHAPERONE PROTEIN DNAJ 49 | 1 | 356 | - | - | |
| Apr1g2144 | 358 | MobiDBLite | consensus disorder prediction | 54 | 88 | - | - | |
| Apr1g2144 | 358 | SUPERFAMILY | Chaperone J-domain | 102 | 213 | IPR036869 | - | |
| Apr1g2144 | 358 | MobiDBLite | consensus disorder prediction | 54 | 74 | - | - | |
| Apr1g2144 | 358 | SMART | dnaj_3 | 105 | 162 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g2144 | Apr-Chr1 | 30928523 | 30933993 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr1g2144 | 101 | 167 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT2G01710 | 38.028 | 2.50e-08 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g2144 | K09518 | - | gmx:100820432 | 503.442 |
Event-related genes