Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2130 ATGGCTCAAGTCGAAAACGATGAAGCCACACGAAAATTCAAGGAGAATCCAATCCCCAACGATTTCGATGCAAAGGGTTACAGTCTCAGCGGCAAGATCATGCTCTCCGCCATAATCCTTCTCTTCTTCGTCGTCATTTTGATGCTCTGTCTTCACATATACGCCCGATGGTACCTTATTCGCGCTCGTCGCCGTCACCTCCGCCGCAACCGTCGTAGCGGTCGGACGCAGCTCGTGTTCTACGACCACGCCGACAACCCCGCCGCCATCTCCCGTGGCCTCGACGCCGCCGTCATCGCCTCGCTTCCTGTCTTCTCCTACGACCCCAAGAATCAGCCGGAGAATCCGACGGAATGTGCTGTGTGTTTGTCGGAGTTCGAATCGGGTGAAATGGGTCGGGTTTTGCCCAAATGTAACCACAGCTTTCATACTGAGTGTATAGACATGTGGTTCCATTCTCACGCCACGTGTCCGCTTTGTCGTGCTCCGGTTGAACCCGCGCCCGAAGGAGAGACCCGAGCCGAAGTGGTTATAATGGTGTGTGAACTGGAATCCGGTTCGGGTTCCGGTTCGGGTTCAATGGAAGATGAGAACCGAAACCGAACCGGTCGAGAGGGTTCATGTTCTACTTCTTCGGTCGGGACGAGGAAACCGTCGTTAGTTGGTGTGACCGTTGAGGTGCCTTTGAGGAACGAGAATTTTGGGGACGAGTCGAGTTGCGACTCGCCCTCGACACAGTCTTCGTTTCGGTCGCCGATGAGTCGTATGTTGTCGTTCAAGAGAATACTTAGTAGGGAACGGAAGGGAAGCGTTTCCCCGTCGTCGTGCGGCGGCGCTTGCAGCTCTGCGGCTGAGTCCAACGCGGAACGAGGTGGGGGCGACGAGACTCGGTGA 894 0.557 MAQVENDEATRKFKENPIPNDFDAKGYSLSGKIMLSAIILLFFVVILMLCLHIYARWYLIRARRRHLRRNRRSGRTQLVFYDHADNPAAISRGLDAAVIASLPVFSYDPKNQPENPTECAVCLSEFESGEMGRVLPKCNHSFHTECIDMWFHSHATCPLCRAPVEPAPEGETRAEVVIMVCELESGSGSGSGSMEDENRNRTGREGSCSTSSVGTRKPSLVGVTVEVPLRNENFGDESSCDSPSTQSSFRSPMSRMLSFKRILSRERKGSVSPSSCGGACSSAAESNAERGGGDETR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2130 297 SUPERFAMILY RING/U-box 99 167 - -
Apr1g2130 297 CDD RING-H2_EL5_like 118 161 - -
Apr1g2130 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 24 230 - -
Apr1g2130 297 MobiDBLite consensus disorder prediction 185 220 - -
Apr1g2130 297 MobiDBLite consensus disorder prediction 235 254 - -
Apr1g2130 297 SMART ring_2 119 160 IPR001841 -
Apr1g2130 297 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Apr1g2130 297 MobiDBLite consensus disorder prediction 204 218 - -
Apr1g2130 297 MobiDBLite consensus disorder prediction 268 282 - -
Apr1g2130 297 Pfam Ring finger domain 118 161 IPR001841 -
Apr1g2130 297 PANTHER RING-H2 FINGER PROTEIN ATL64 24 230 - -
Apr1g2130 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 168 IPR013083 -
Apr1g2130 297 MobiDBLite consensus disorder prediction 232 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2130 Apr-Chr1 30803906 30805329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2130 15 297 Rapid Response to Elicitors AT3G16720 49.216 3.84e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2130 - - gmx:100791545 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2258 9 30405718 30406902 Apr1g2130 1 30803906 30805329 PCT