Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2128 ATGGATATTTGTAAAGAAGTGTTGGATTATGCTGTTGATGGCATTCATAAATCTGTCGACACTTTGGACAAGTTTGAGTTAAGCAAGGTGAGTGAGTTTGCTTATGATCTCAAGGTTTGGCTCACTGGGTCACTCTCTCACCAACAAACTTGTTTGGATGGTTTTGTGAACACAACCACAAATGCTGGGGAGACTATGGCTAAGGTTATGAACACTTCTTTGGAACTTAGTAGCAATGCTGTGGATATAGTCAATGGGGCTTCTGAGTTTTTCAAGGAACTTAACCTTACCACAAAGGGTAATAGGAAGCTTCTCTCTCTTGTTGGTGGTGGTTTTCCTTCGTGGGTTAGTGAAGGGCAACGAAGCCTTCTCGAAGTTGGGCCTGGAGATGTTAAGCCCAATGTGCTTGTGGCCCAAGATGGGAGTGGCCAGTTTAAAACACTCGCTGATGCTCTCAAAACTGTTCCCCCAAACAATGCACAGCCGTTTGTGATTTATGTCAAAGCTGGTGTGTACAATGAGATTGTGAATGTGGCCAAGGAAATGACCCATGTCACTGTTATTGGAGATGGTCCCACTAAGACCATTTTCACCGGTAGCTTGAACTATGTCGATGGTTTCCTAGTTTACAACACAGCTACCTTCGGCGTTAATGGTGACTATTTCATTGGCAAGAACATTGGTTTCGAGAACACAGCAGGATCGGAGAAGCGGCAAGCAGTGGCACTTCGAGTGACCACAGACCACGCCGCATTCTACAATTGTAAAATTGATGGGTTCGAAAACAGCCTCTACGCCCAATCGCAACGTCAATTCTACCGCGATTGCACAATCAGTGGCACAGTTGACTTTGTCTTTGGGGATGCATTTGGAGTCTTCCAAAATTGCAATCTAACGGTGAGAAAACCTTTGGATAACCAGCGGTGCACCGTCACAGCAAGCGGGAGAACAACACCGAACAGCCCCAGCGCCCTCGTGTTCCAAAGTTGCCACTTCACGGGAGATGCTGACGTGGCAACATTGACCCCCAAAATAGCGTACCTTGGAAGGCCTTGGAAGCCTTACTCTAAGGTTGTCATCATCGACTCTCTGATTGACAACATATTTTCCCCCGAAGGATACATCGCATGGATGGGAAGGGCGTTTATGGACACGTGTACGTTTTTTGAGTACAATAACAAAGGTGCTGGTGCTGACACGTCAGCAAGAGTTAAGTGGCCAGGTGTTAGGACCATAAGTTCTGTTGAAGCAGGGGATTATTATCCTGGGAGATTCTTTCAACTTGCTAATTCAACCGAACGTGATGCTTGGATCGTTGATTCTGGGGTACCCTACTCCCTTGGCCCCATTGTGACTGTGACTGCCCAAGCCCAAGCCCAAGCCCAAAGTCCTATACCCACTGTGTTAGTAAAAGGAGAAAGCAAAACGCATGCTTGA 1437 0.4656 MDICKEVLDYAVDGIHKSVDTLDKFELSKVSEFAYDLKVWLTGSLSHQQTCLDGFVNTTTNAGETMAKVMNTSLELSSNAVDIVNGASEFFKELNLTTKGNRKLLSLVGGGFPSWVSEGQRSLLEVGPGDVKPNVLVAQDGSGQFKTLADALKTVPPNNAQPFVIYVKAGVYNEIVNVAKEMTHVTVIGDGPTKTIFTGSLNYVDGFLVYNTATFGVNGDYFIGKNIGFENTAGSEKRQAVALRVTTDHAAFYNCKIDGFENSLYAQSQRQFYRDCTISGTVDFVFGDAFGVFQNCNLTVRKPLDNQRCTVTASGRTTPNSPSALVFQSCHFTGDADVATLTPKIAYLGRPWKPYSKVVIIDSLIDNIFSPEGYIAWMGRAFMDTCTFFEYNNKGAGADTSARVKWPGVRTISSVEAGDYYPGRFFQLANSTERDAWIVDSGVPYSLGPIVTVTAQAQAQAQSPIPTVLVKGESKTHA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2128 478 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Apr1g2128 478 PANTHER PECTINESTERASE 1 453 - -
Apr1g2128 478 Pfam Pectinesterase 134 426 IPR000070 GO:0030599|GO:0042545
Apr1g2128 478 PANTHER PECTINESTERASE 1 453 - -
Apr1g2128 478 CDD PMEI-like_3 1 88 - -
Apr1g2128 478 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 85 IPR035513 -
Apr1g2128 478 SUPERFAMILY Pectin lyase-like 132 427 IPR011050 -
Apr1g2128 478 Pfam Plant invertase/pectin methylesterase inhibitor 2 82 IPR006501 GO:0004857
Apr1g2128 478 ProSitePatterns Pectinesterase signature 1. 159 178 IPR018040 -
Apr1g2128 478 Gene3D - 131 450 IPR012334 -
Apr1g2128 478 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 86 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2128 Apr-Chr1 30796468 30798280 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2128 1 445 Carbohydrate Esterase AT5G49180 47.461 4.21e-152 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2128 K01051 - gmx:100784682 644.425