Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2126 ATGGTTGGCATCTCTTCCGTCCTCCTTGTGGCTATGGTGGCTGCCGTGGCTGTTAGCTTAACCCACAGAGGCGCAACCTTAGATGGAAACGATCACCTCCATAGTTCTCAAAGGACCAACGTGGACATTCTTTGCCAACCAACACAGTACCAAGAAACCTGCAAGAAAAGCCTCGAAAAATCATCTGAAACCGCAAACATGAAAGAGCTCATAAAAACCGCGTTCAATGCCACAGCTATTGAGCTTTTAAACCACATAAACAACTCCACCCTCTATCAAGAGTTGGCCAAGGACAACATGACAAGACAAGCCATGGATATTTGTAAAGAAGTGTTGGATTATGCTGTTGATGGCATTCATAAATCTGTCGACACTTTGGACAAGTTTGAGTTAAGCAAGGTGAGTGAGTTTGCTTATGATCTCAAGGTTTGGCTCACTGGGTCACTCTCTCACCAACAAACTTGTTTGGATGGTTTTGTGAACACAACCACAAATGCTGGGGAGACTATGGCTAAGGTTATGAACACTTCTTTGGAACTTAGTAGCAATGCTGTGGATATAGTCAATGGGGCTTCTGAGTTTTTCAAGGAACTTAACCTTACCACAAAGGGTAATAGGAAGCTTCTCTCTCTTGTTGGTGGTGGTTTTCCTTCGTGGGTTAGTGAAGGGCAACGAAGCCTTCTCGAAGTTGGGCCTGGAGATGTTAAGCCCAATGTGCTTGTGGCCCAAGATGGGAGTGGCCAGTTTAAAACACTCGCTGATGCTCTCAAAACTGTTCCCCCAAACAATGCACAGCCGTTTGTGATTTATGTCAAAGCTGGTGTGTACAATGAGATTGTGAATGTGGCCAAGGAAATGACCCATGTCACTGTTATTGGAGATGGTCCCACTAAGACCATTTTCACCGGTAGCTTGAACTATGTCGATGGTTTCCTAGTTTACAACACAGCTACCTTCGGCGTTAATGGTGACTATTTCATTGGCAAGAACATTGGTTTCGAGAACACAGCAGGATCGGAGAAGCGGCAAGCAGTGGCACTTCGAGTGACCACAGACCACGCCGCATTCTACAATTGTAAAATTGATGGGTTCGAAAACAGCCTCTACGCCCAATCGCAACGTCAATTCTACCGCGATTGCACAATCAGTGGCACAGTTGACTTTGTCTTTGGGGATGCATTTGGAGTCTTCCAAAATTGCAATCTAACGGTGAGAAAACCTTTGGATAACCAGCGGTGCACCGTCACAGCAAGCGGGAGAACAACACCGAACAGCCCCAGCGCCCTCGTGTTCCAAAGTTGCCACTTCACGGGAGATGCTGACGTGGCAACATTGACCCCCAAAATAGCGTACCTTGGAAGGCCTTGGAAGCCTTACTCTAAGGTTGTCATCATCGACTCTCTGATTGACAACATATTTTCCCCCGAAGGATACATCGCATGGATGGGAAGGGCGTTTATGGACACGTGTACGTTTTTTGAGTACAATAACAAAGGTGCTGGTGCTGACACGTCAGCAAGAGTTAAGTGGCCAGGTGTTAGGACCATAAGTTCTGTTGAAGCAGGGGATTATTATCCTGGGAGATTCTTTCAACTTGCTAATTCAACCGAACGTGATGCTTGGATCGTTGATTCTGGGGTACCCTACTCCCTTGGCCCCATTGTGACTGTGACTGCCCAAGCCCAAGCCCAAGCCCAAAGTCCTATACCCACTGTGTTAGTAAAAGGAGAAAGCAAAACGCATGCTTGA 1749 0.466 MVGISSVLLVAMVAAVAVSLTHRGATLDGNDHLHSSQRTNVDILCQPTQYQETCKKSLEKSSETANMKELIKTAFNATAIELLNHINNSTLYQELAKDNMTRQAMDICKEVLDYAVDGIHKSVDTLDKFELSKVSEFAYDLKVWLTGSLSHQQTCLDGFVNTTTNAGETMAKVMNTSLELSSNAVDIVNGASEFFKELNLTTKGNRKLLSLVGGGFPSWVSEGQRSLLEVGPGDVKPNVLVAQDGSGQFKTLADALKTVPPNNAQPFVIYVKAGVYNEIVNVAKEMTHVTVIGDGPTKTIFTGSLNYVDGFLVYNTATFGVNGDYFIGKNIGFENTAGSEKRQAVALRVTTDHAAFYNCKIDGFENSLYAQSQRQFYRDCTISGTVDFVFGDAFGVFQNCNLTVRKPLDNQRCTVTASGRTTPNSPSALVFQSCHFTGDADVATLTPKIAYLGRPWKPYSKVVIIDSLIDNIFSPEGYIAWMGRAFMDTCTFFEYNNKGAGADTSARVKWPGVRTISSVEAGDYYPGRFFQLANSTERDAWIVDSGVPYSLGPIVTVTAQAQAQAQSPIPTVLVKGESKTHA* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2126 582 PANTHER PECTINESTERASE 3 557 - -
Apr1g2126 582 CDD PMEI-like_3 44 192 - -
Apr1g2126 582 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Apr1g2126 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 191 IPR035513 -
Apr1g2126 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 189 IPR035513 -
Apr1g2126 582 SMART PMEI_2 36 187 IPR006501 GO:0004857
Apr1g2126 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 189 IPR006501 GO:0004857
Apr1g2126 582 Pfam Plant invertase/pectin methylesterase inhibitor 42 186 IPR006501 GO:0004857
Apr1g2126 582 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Apr1g2126 582 Pfam Pectinesterase 238 530 IPR000070 GO:0030599|GO:0042545
Apr1g2126 582 PANTHER PECTINESTERASE 3 557 - -
Apr1g2126 582 Gene3D - 235 554 IPR012334 -
Apr1g2126 582 SUPERFAMILY Pectin lyase-like 236 531 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2126 Apr-Chr1 30787035 30789162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2126 1 552 Carbohydrate Esterase AT3G05610 44.624 2.42e-174 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2126 K01051 - gmx:100784682 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2126 1 30787035 30789162 Apr1g2126 1 30787035 30789162 ECH
Apr9g2259 9 30411009 30412754 Apr1g2126 1 30787035 30789162 PCT