Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2122 ATGTGTGGAGGTGCTATTATTTCAGACTTCATTGGCGTCAAGCGTGCCCGCAACCTCGCCCCTCACGACCTCTGGTCCGAGCTCGACCCTTTCTCCGACCTCCTCGGCTTCCAACCCACCCCCCAACCACCCAAAAAAGAGGTAGCATGTGACAAGAAGGAGAAGAAAAGCGTGGGTGGAGGGAAGAAGAGTAGCGATGGTAAGAGAACTCGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCAGAAATAAGGGACCCACATAAGGGTGTCCGTGTCTGGCTGGGCACCTTCCCCACCGCCGAAGAAGCCGCCAGAGCCTACGACACCGCCGCCAAACGCATCCGTGGCGACAAAGCCAAACTCAACTTCCCCGCCACCACCGCCACTCCGCCGCCGGACCCACCCTCCAAGAAGCGCTGCCTCACCCCTGACACCACTGAACAAAGCACCACCCACTCCGCCGCATCTCCGCCATACTCCGCCGTGAACGGCGGAGACAGCGGAGGAGAGGAACTCGACCTGAAGCAGCAAATCTCGAACCTTGAGTGGTTCCTCGGCTTGGAGAATGAGCAGCCGGTGTCCGTCGGAAGCTCCGGCGGTGCTGAGTGGGATAACAATGATAACTACATGGACGACCTTTGGATGCTAGACGACGTTGTTATGTCCAACCGTCACATGGTTTACTAA 708 0.5805 MCGGAIISDFIGVKRARNLAPHDLWSELDPFSDLLGFQPTPQPPKKEVACDKKEKKSVGGGKKSSDGKRTRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDTAAKRIRGDKAKLNFPATTATPPPDPPSKKRCLTPDTTEQSTTHSAASPPYSAVNGGDSGGEELDLKQQISNLEWFLGLENEQPVSVGSSGGAEWDNNDNYMDDLWMLDDVVMSNRHMVY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2122 235 PANTHER DNA-BINDING DOMAIN 50 149 IPR044808 GO:0003700|GO:0009873
Apr1g2122 235 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Apr1g2122 235 MobiDBLite consensus disorder prediction 46 73 - -
Apr1g2122 235 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 MobiDBLite consensus disorder prediction 148 167 - -
Apr1g2122 235 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 CDD AP2 75 130 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 PANTHER EREBP TRANSCRIPTION FACTOR 50 149 - -
Apr1g2122 235 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Apr1g2122 235 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Apr1g2122 235 MobiDBLite consensus disorder prediction 35 76 - -
Apr1g2122 235 MobiDBLite consensus disorder prediction 125 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2122 Apr-Chr1 30698879 30700272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2122 1 229 AP2-EREBP Transcription Factor Family AT3G16770 44.569 1.35e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr1g2122 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2122 K09286 - gmx:100817253 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2122 1 30698879 30700272 Apr1g2122 1 30698879 30700272 ECH
Apr9g2264 9 30434202 30435776 Apr1g2122 1 30698879 30700272 PCT