Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2121 ATGGCGACGGAGAAGTTAATGTCCGGGGACGGCCCCCGCTACGTTCAGATGAAATCGTCGCCGCCGCCATCGCCGCCGTCTGTGGCGGCCGAGGAGATGTCGTCTGTCCCGTCGTTCCGGCAATCCGGCGCCGAAGCTAGTCGGATTTTCGACGAATTACCGAAAGCCACTATCGTCTCTGTCTCTCGCCCCGACGCCAGCGACATCAGCCCCATGCAACTCTCTTACACCATTTGTGTTCAGTACAAACAATTCAAGTGGGAGCTATTGAAGAAAGCTCATCAAGTATTTATTTTGCATTTTGCATTAAAGAAACGTGCTATTATTGAGGAAATTCATGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTTTGGTGCAAGATGATGATGAAGTTGACGATGAAGCTGGTCCATTTCATACTGATGAAAGTGCTAAAGAAAGAGATGTTCCATCTAGTGCTGCTCTTCCAATTATACGGCCAGCCATAGGAAGACAGCAATCGATTGCAGACAGGGCAAAGGTTGCAATGCAAGGGTATCTGAATCACTTTTTGGGAAATATCAGTATGGTTAACTCTCGTGAGGTTTGCAAGTTTTTGGAGGTATCAAAATTATCTTTTTCTCCTGAATATGGCCCTAAGTTGAAGGAAGACTATGTACTGGTGAAGCATCTACCTAAGATTCCAAATGATGATGATTCCAGAAAGTGTTGTATGTCTGGCTGTTTTAGTTGCTGTAATGACAACTGGCAAAAGGTATGGGCTGTACTGAAGCCTGGATTCTTGGCATTGTTGGCTGATCCTTTTGATATGCAGCCTTTGGACATCATTGTTTTCGATGTACTGCCTGCCTCAGATGGAAATGGGGATGGCCGTCTATCACTGGCAAGTGAAGTGAAGGATCGAAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAATCCGGAGCATTAGAATTAGAGTGAAAAGTAGTAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCTGAAGGCTGGTGTCATCCTCATCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAGTCGATGATGGAAGTCAAGCCCAGTGGTTCATAGATGGGCGAACAGCTTTTGAGGCCATTGCTTCTTCAATTGAGGATGCAAAATCAGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTTCGGCGACCTTTCCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAGGCAAGGGATTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTATATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTGCGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCGCACCATGAAAAACTTGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACACCTGAGCATAAAGTGGGAGATTTCCCTCCTCAAATCTGGCCTGGAAAGGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACAATGAAAGATGAATTGGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGAGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCTAAGAGAAACAAAGCTCCATATGAGCAAGCAATACCGTTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGCAGCAGCGAGATACATATTGAAAGCAAGAACACTGACAATTATAGAGTCCTCAAGAGAGAAGATTCATTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTTTTGCCTCAGGAGTCTGATGCGTTGGATTCTCATGAAGGAAACAAAAAAACAAATGGAAGGATCAGCAATGGTCTTCCGTTCCCGTTCCGGAAGGCCAAAATTGTTGCAGTTGGTCCAGATACACCAATGAAGGGCTTTGTAGATGATCTAGATTCTGTGCGTTATCATGAGAAAATGTCTCTGGATAGAGTGGCCCATGTTGATTTACAAAATACAGATCCAGAATGGTGGGAAACACAAGAACGGAATGATCAGGGAGGTTTTTCTGATGAATCAGGACAAGTTGGTCCCCGTGCTTCCTGCCGTTGCCAGGTTATTAGGAGCGTGAGTCAATGGTCTGCTGGAACAAGTCAAACAGAAGAGAGCATCCACAATGCTTATTGTTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGAATCAGTTTTTTATCTCTGGTCTTTCTGGAGATGAGATGATACGGAATCGCGTGTTAGAAGCTTTATATCGACGGATTTTGCGAGCTTACAATGACAAAAAATCTTTTAGGGCTATAATTGTCATACCTCTCCTGCCTGGCTTCCAGGGGGGCCTTGATGATAGCGGTGCAGCATCTGTAAGAGCCATAATGCATTGGCAGTATAGAACCATTTGCAGAGGGCAAAATTCTATCTTGCATAATCTTTATGAACTTCTCGGTTCTAGAATACATGACTACATCTCTTTTTACGGCCTAAGGTCTTATGGTAGACTCTCTGATGGAGGCCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTATTGATGATTGTGTTAGTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCTAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAGAGAGTTGATTGATTCTTTTATGGATGGAAAGCCTTGGAAAGCAGGAAAATTTTCCTTGACTCTTAGATTGTCATTATGGTCTGAGCACTTGGGTCTCCCTGCAATGGAGGTCAATCAAATAATGGACCCAGTTGTTGGATCTACTTACAAGGAAATTTGGATGGCAACAGCGAAGACAAATACTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGTGTGGCTTTTTGGAAAGAAAAAATTGGTCACACGACCATTGATTTAGGAATAGCCCCAGGAAAATTACAATCCTATCATGATGGAGATACTAAGAACACTGATCCCTTGGAGAGACTAGCATCAGTGAGGGGTCACCTTGTCTCTTTTCCCTTGGAGTTTATGTGTCAAGAAAGTCTAAGACCAGCTTTTAATGAAAGCGAATACTACGCTACTCAAGTTTTCCATTGA 3327 0.428 MATEKLMSGDGPRYVQMKSSPPPSPPSVAAEEMSSVPSFRQSGAEASRIFDELPKATIVSVSRPDASDISPMQLSYTICVQYKQFKWELLKKAHQVFILHFALKKRAIIEEIHEKQEQVKEWLQNLGIGEHTALVQDDDEVDDEAGPFHTDESAKERDVPSSAALPIIRPAIGRQQSIADRAKVAMQGYLNHFLGNISMVNSREVCKFLEVSKLSFSPEYGPKLKEDYVLVKHLPKIPNDDDSRKCCMSGCFSCCNDNWQKVWAVLKPGFLALLADPFDMQPLDIIVFDVLPASDGNGDGRLSLASEVKDRNPLRHSFKVTCGIRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLVDDGSQAQWFIDGRTAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEAKARQGIQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTPEHKVGDFPPQIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGSSSEIHIESKNTDNYRVLKREDSFSSSSQDQDIPLLLPQESDALDSHEGNKKTNGRISNGLPFPFRKAKIVAVGPDTPMKGFVDDLDSVRYHEKMSLDRVAHVDLQNTDPEWWETQERNDQGGFSDESGQVGPRASCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRILRAYNDKKSFRAIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSRIHDYISFYGLRSYGRLSDGGPVATSQVYVHSKIMIIDDCVSLIGSANINDRSLLGSRDSEIGVVIEDRELIDSFMDGKPWKAGKFSLTLRLSLWSEHLGLPAMEVNQIMDPVVGSTYKEIWMATAKTNTTIYQDVFSCVPNDLIHTRLAFRQSVAFWKEKIGHTTIDLGIAPGKLQSYHDGDTKNTDPLERLASVRGHLVSFPLEFMCQESLRPAFNESEYYATQVFH* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2121 1108 MobiDBLite consensus disorder prediction 1 40 - -
Apr1g2121 1108 Gene3D Endonuclease Chain A 727 965 - -
Apr1g2121 1108 CDD PLDc_vPLD1_2_yPLD_like_1 377 521 - -
Apr1g2121 1108 CDD PH_PLD 200 347 - -
Apr1g2121 1108 Pfam PLD-like domain 895 954 IPR025202 -
Apr1g2121 1108 Gene3D Endonuclease Chain A 371 608 - -
Apr1g2121 1108 Pfam Phospholipase D Active site motif 484 511 IPR001736 GO:0003824
Apr1g2121 1108 SUPERFAMILY PH domain-like 243 347 - -
Apr1g2121 1108 Gene3D - 252 349 IPR011993 -
Apr1g2121 1108 SUPERFAMILY Phospholipase D/nuclease 335 604 - -
Apr1g2121 1108 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 484 511 IPR001736 GO:0003824
Apr1g2121 1108 SMART pld_4 484 511 IPR001736 GO:0003824
Apr1g2121 1108 SMART pld_4 905 932 IPR001736 GO:0003824
Apr1g2121 1108 PANTHER PHOSPHOLIPASE 36 1105 - -
Apr1g2121 1108 SMART PH_update 223 351 IPR001849 -
Apr1g2121 1108 SUPERFAMILY Phospholipase D/nuclease 745 956 - -
Apr1g2121 1108 PANTHER PHOSPHOLIPASE D 36 1105 IPR015679 -
Apr1g2121 1108 Coils Coil 105 125 - -
Apr1g2121 1108 PIRSF PLD_euk 27 620 IPR016555 GO:0004630|GO:0006654|GO:0048017
Apr1g2121 1108 PIRSF PLD_euk 610 1108 IPR016555 GO:0004630|GO:0006654|GO:0048017
Apr1g2121 1108 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 905 932 IPR001736 GO:0003824
Apr1g2121 1108 CDD PLDc_vPLD1_2_yPLD_like_2 765 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2121 Apr-Chr1 30668637 30683433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2121 1 989 Phospholipase D Gene Family (Wang group) AT3G16785 73.642 0.0 1415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2121 K01115 - gmx:100780514 2060.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2121 1 30668637 30683433 Apr1g2121 1 30668637 30683433 ECH