Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2116 ATGGGACAAGAATCAGATCACAAAACCCGGTTGGTATTGGAGATTTGCTCCATTTCCAGCCGTTCAGTTATATGTGTTCATAGACTTATCTCAAACCCTGCCAAGGCTTCTTTCATTGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGTAGAGGTAAATAGCATTCGCAAGCAATACCATAAACTTGCCTTGCAACTTCATCCGGACAAAAATAAACACCCAAAGGCTGAAATTGCATTCAAGCTTGTCTCTGAGGCATATACATGTCTGTCTGATACGGCAAGAAGAAAGACTTTTGACTTGGAGAGATATAAGAATTTCTGCTTTGAGTGCAATAGAATCCCGTATACATCAAGCAATGTCCCAGGCAATTTCAATGGTTCTAGTTTCAAGACATGGAATAGTACTAGCAAGTCAAGATCTTATAAAGTTTGGAGAAATATTAGGGACACGAGAGAAAGATTGAAAGAGGAGGCTAAGGTGATAGAGAACTGTCTGCGGGCAAATTCAATGTCAAAGAAAGAATCTCCCCTCTACAATCCAGCTGACTTTGCACATGGAAGCAGGTGCCAGCACAAAATTGAGAAAGAAATCCCGGTTTTCAATCCATTGAAATACTTGTACCAAGGCTACCCTCATCCAAAGGGCCATGTTTACAAGAATTTTGAGACACGTTGGTTCTTGCAAACACAAGATATAGTGCACAATGACAAGAGGGGAGCTAAGTATGCTGACCCCGTTTTTTATGTCAAATCACAAAGAAGCATGCTCACAAGTAAATTTGCATCTGTCCCATCACAATGCTAG 810 0.4049 MGQESDHKTRLVLEICSISSRSVICVHRLISNPAKASFIDWYCILGVEENVEVNSIRKQYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSDTARRKTFDLERYKNFCFECNRIPYTSSNVPGNFNGSSFKTWNSTSKSRSYKVWRNIRDTRERLKEEAKVIENCLRANSMSKKESPLYNPADFAHGSRCQHKIEKEIPVFNPLKYLYQGYPHPKGHVYKNFETRWFLQTQDIVHNDKRGAKYADPVFYVKSQRSMLTSKFASVPSQC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2116 269 PANTHER BNAC03G44070D PROTEIN 4 259 - -
Apr1g2116 269 CDD DnaJ 40 93 IPR001623 -
Apr1g2116 269 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 259 - -
Apr1g2116 269 SUPERFAMILY Chaperone J-domain 29 105 IPR036869 -
Apr1g2116 269 SMART dnaj_3 39 96 IPR001623 -
Apr1g2116 269 PRINTS DnaJ domain signature 42 60 IPR001623 -
Apr1g2116 269 PRINTS DnaJ domain signature 60 75 IPR001623 -
Apr1g2116 269 PRINTS DnaJ domain signature 76 96 IPR001623 -
Apr1g2116 269 Pfam DnaJ domain 40 101 IPR001623 -
Apr1g2116 269 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Apr1g2116 269 Gene3D DnaJ domain 39 158 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2116 Apr-Chr1 30637077 30638709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2116 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 43.939 9.39e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2116 - - gmx:100778573 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2116 1 30637077 30638709 Apr1g2116 1 30637077 30638709 ECH
Apr9g2269 9 30463245 30464517 Apr1g2116 1 30637077 30638709 PCT