Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2102 ATGAATCTCAGCAACAGCAAGGGATCCATGTCAACGCCCAGTTCAAGTTCTCCTCTGAAAGCCAGCGACGCCGTCTCCGACAAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTAGATGATGACCCCACGTGCCTTATGATCCTTGAGAGGATGCTGCGGGCTTGTCTCTATGAAGTTACGAAATGCAAGCGAGCAGAGGTTGCATTGTCACTTCTGAGAGAAAACAAAAATGGGTTTGATATTGTTTTAAGCGATGTGCATATGCCGGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCTGATGATGGAAAAAATGTTGTAATGAAAGGTGTGAGACATGGTGCTTGCGATTACCTAATTAAACCTGTGCGTATTGAGGCTTTGAGGAATATATGGCAGCATGTCGTTCGGAAGAAGAAGAATGGGTGGAAAGATCTGGAGCAATCAGGTAGCATTGAAGAAGGAGATCGACCTCAAAAGGGATCTGATGAAGGAGACTACTCATCCTCGGTAAATGAAGGTAAAAGCTCAAGGAAGAGGAGGGATGAGGAAGAGGAAGGAGAGGAGAGGGATGATACTTCCTCACTGAAGAAGCCGCGGGTTGTTTGGTCTGTCGAACTCCATCAACAGTTTATGGCTGCTGTGAATCAACTGGGAATTGATAAGGCTGTACCGAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTCGAAGGCTGAGTGGAGTTTCCCAGCAGCAGAGTAACTTGAACAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACTTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCCGCAGGACTTGGCAGGTCAACTGCAAAAACAGGTATGCCCATGCCTCTATCTGACCAAAAGAACCTTTTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGCAACTGCAACATTTGAGCAGCAGTAAACCAATGAACTTGCTTCATGGAATCCCGACCAACATGGAACCAAAACAGCTTGCCAATTTGCATCAATCTGCTCAATCCCTTGGCAACTTGAATATGCGAGTCAACGGTTCTGCTGCACAAAACAACCCCTTGTTGATGCAGATGGTTCAGTCTCATCCAAGAGGTCAGATGCTAAGTGAAAATGCTGGTTCACATGTTACCAGGTTTCCATCATCTTTGGTGCAGCCTACAACGCCAAATGGAATTTCTAATGGTGTACTGGGAAATGGGATTGCTGGTACCAGCAACATAACTCCTGCTTATAATTCAGTTCCACAAAGCTCTTCATTGTTGAGTTTCCCAATGAACCAAACCAATGACATGTCTGTCAATAGTTTCCCTCTCAGAAGCACTCCAGGTATGACCAATATCCCAACAAAAGGCATGTTTCGTGAAGAAGGTACCTCAGATATTAAAGGACCTGGTGGATTAGTTCCAAGTTATGATATTTTTAATGAACTCCACCATCAAAAATCCCATGGCTGGGACTTAACAAACCCCGGCATGACATATGATACTTCTCAGCATGCAAATCCTTTGCAAGGTAACATTAATGTCACGCCATCAGTTTTAGTCCATCAGGGTTTTTCCTCTATGCAACAGACTGGACAAAATAGAGATACTACTTCAATTGGAAAAGCTATGTTCTCCATGGGTGAAGGCATGCATCAAGGAAATATCCAAAGTCTTGGTCAACCCCTCAATAACCTTATTATTGACAACTCAGTAAGGGTTAAGACTGAAAAAATTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGAGCAATATGTTCAGGAGGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGACCAGCTGGAAATGAGTTTGACTTTGATGGATATTCCCTAGACAACATTCCAGTGTAG 2034 0.439 MNLSNSKGSMSTPSSSSPLKASDAVSDKFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVRHGACDYLIKPVRIEALRNIWQHVVRKKKNGWKDLEQSGSIEEGDRPQKGSDEGDYSSSVNEGKSSRKRRDEEEEGEERDDTSSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLAKLQAAGLGRSTAKTGMPMPLSDQKNLFSFENPRLRFGEGQLQHLSSSKPMNLLHGIPTNMEPKQLANLHQSAQSLGNLNMRVNGSAAQNNPLLMQMVQSHPRGQMLSENAGSHVTRFPSSLVQPTTPNGISNGVLGNGIAGTSNITPAYNSVPQSSSLLSFPMNQTNDMSVNSFPLRSTPGMTNIPTKGMFREEGTSDIKGPGGLVPSYDIFNELHHQKSHGWDLTNPGMTYDTSQHANPLQGNINVTPSVLVHQGFSSMQQTGQNRDTTSIGKAMFSMGEGMHQGNIQSLGQPLNNLIIDNSVRVKTEKIPDPSSQINNLFSEQYVQEDLMSALLKQQEGIGPAGNEFDFDGYSLDNIPV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2102 677 CDD REC_typeB_ARR-like 35 149 - -
Apr1g2102 677 MobiDBLite consensus disorder prediction 160 176 - -
Apr1g2102 677 MobiDBLite consensus disorder prediction 160 208 - -
Apr1g2102 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 647 - -
Apr1g2102 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 267 IPR017930 -
Apr1g2102 677 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Apr1g2102 677 Gene3D - 33 163 - -
Apr1g2102 677 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Apr1g2102 677 Gene3D - 208 270 - -
Apr1g2102 677 SMART REC_2 33 145 IPR001789 GO:0000160
Apr1g2102 677 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Apr1g2102 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Apr1g2102 677 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g2102 677 MobiDBLite consensus disorder prediction 488 507 - -
Apr1g2102 677 PIRSF RR_ARR_type-B 8 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Apr1g2102 677 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Apr1g2102 677 SUPERFAMILY CheY-like 32 152 IPR011006 -
Apr1g2102 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 647 IPR045279 GO:0009736
Apr1g2102 677 MobiDBLite consensus disorder prediction 186 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2102 Apr-Chr1 30552650 30556755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2102 67 677 Response Regulator Gene Family AT3G16857 49.540 1.44e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr1g2102 Response_reg 1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2102 - K14491 gmx:100809583 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2102 1 30552650 30556755 Apr1g2102 1 30552650 30556755 ECH
Apr9g2280 9 30536344 30540824 Apr1g2102 1 30552650 30556755 PCT