Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2101 ATGGCCTTGCATGTCCATAACTCCTACTTTTTCTACACCGTCATCGTCATGGCCATCTTCTCCGCAACGCCGTCGATGTCTCAGCCGCAAACGGCCAACTCCTGCAACGGAATATTCCTGTCGTACGCCTACACCGGCGGCGCGAAGCTGCCGCCGAACGTGTCGGAGCTGGCGCAGCAACCGTACCGGTTCGAGTCGACGCTGACGGTGCTGAATAACGGGCTACAAGAACTGAAGTCATGGAGAGTGTTCGTAGGGTTTCAGCATAACGAGTGGTTGGTATCTGCGTCGAATGCGGTGCTCGCCGACGGCACGAATTTACCCAGTGCGGTTGGGAACGGCACCATTTTGAGTGGGTCGACGGTGACGAATTTGAAGACGGCGGCGGAGACGGCTGGCGACATGGGGCTGATGGAGGTTTTGGTGGAAATGGTTGGGACCTTGTTCGGGGTGGCGCCACCCTCTGTGCCTTTGCCTTCCACTTTAAACTTGGTCAATGATGGTTTTGTTTGTGGTCAACCCACTCGTCAAGGGAACAATGAGACTCATGTATGTTGCACAAGTGATCCCAATTTCAAAACAAACATAACCACAGAAGAACAGTTCCTACCCCGGCAAAAGGGTGATCTTAGCATCATCTATGATGTGACAAAAACTTACGATTCCAATTACTGGGCAGAGGTTACAATTGCAATCAACAACCCCCTGGGTCGTCTTGACAACTGGAGATTAAGCTGGGATTGGAAAAATGATGAGTTCATATACACAATGAAAGGAGCTTATCCATCTACTGTAGATTCTTCTGAATGTATCTTCGGTTCTCAAGGTGTTTTCTACAAGGATCTTGACTTTTCCAATGTGTTGAACTGTGAAAGAAGACCAAACATAGTTGATCTCCCTCCCACAAGGTTCAATGATTCAGACCTTGGCAAAATCCCATTTTGCTGCAGGAATGGTACAATTTTGCCACCCACAATGGATCCTAGCATGTCAGCATCAAGGTTCCAAATGCAAGTTTACAAAATGCCGCCAAACCTTAACCGTTCTCAGCTTGCACCACCACAAAACTGGGCAATAAAGGGTACCCTTAACCCTAATTACCAATGTGGCATCCCTATAAGAGTGAGTCCTAGTAAATCACCTGACCCAACAGGGTTACCATCAAACATATCAGCAATTTCTACTTGGCAGATTGTGTGCAACATAACAAACACAAAAAAAGCTACAAGCAAGTGTTGTGTCTCATTTTCAGCTTTTTACAATGAATCAGTTATTCCGTGCAAAACATGTGCATGTGGGTGCCCAAGTAACCCGGAGAGAACCTGTAGTGCTACTTCACCAGCTATGTGGCTTCCACCAGAGGCCCTTCTTGTTCCTTTTGAGAATAGAAGTGAAAAGGCTGTTTCTTGGGCTAAAATCAAGCATTTACCAGTGCCTAATCCTATGCCTTGTGGTGATAACTGTGGTGTGAGCATAAACTGGCATGTGTATACAGATTATCGTAAAGGTTGGACTGCAAGGATCACACTTTTTAACTGGGGTGACACTGATTTTGCTGATTGGTTTGCTGCAGTGCAATTGGACAAAGCTGCAATGGGTTTTGAGGAAATGTATTCATTCAATGGCAGCACCTTACAGAGCGTAAACAACACAATATTCATGCAAGGTAAGAAAGACTTGAATTTTCTTGTAGCTGAAACAAATGGATCTGACCCTAGAAGAGATCCTAGGGTGCCTGGGAAACAGCAATCAGTTATCACATTTACAAAGAAAAAAACTCCGAGAATCAATGTGGCTGGTGGTGATGGGTTTCCTAGTAAAGTGTTCTTCAATGGGGAGGAATGCTCCCTTCCTCTAGTGTTTCCAAGTAGTGGTTTGAGGATGGAGTTTTCCTTGGTTACTATGATGTTCCTAATATTGTTGCCAATCATATTCATGTGGCAATAG 1947 0.4561 MALHVHNSYFFYTVIVMAIFSATPSMSQPQTANSCNGIFLSYAYTGGAKLPPNVSELAQQPYRFESTLTVLNNGLQELKSWRVFVGFQHNEWLVSASNAVLADGTNLPSAVGNGTILSGSTVTNLKTAAETAGDMGLMEVLVEMVGTLFGVAPPSVPLPSTLNLVNDGFVCGQPTRQGNNETHVCCTSDPNFKTNITTEEQFLPRQKGDLSIIYDVTKTYDSNYWAEVTIAINNPLGRLDNWRLSWDWKNDEFIYTMKGAYPSTVDSSECIFGSQGVFYKDLDFSNVLNCERRPNIVDLPPTRFNDSDLGKIPFCCRNGTILPPTMDPSMSASRFQMQVYKMPPNLNRSQLAPPQNWAIKGTLNPNYQCGIPIRVSPSKSPDPTGLPSNISAISTWQIVCNITNTKKATSKCCVSFSAFYNESVIPCKTCACGCPSNPERTCSATSPAMWLPPEALLVPFENRSEKAVSWAKIKHLPVPNPMPCGDNCGVSINWHVYTDYRKGWTARITLFNWGDTDFADWFAAVQLDKAAMGFEEMYSFNGSTLQSVNNTIFMQGKKDLNFLVAETNGSDPRRDPRVPGKQQSVITFTKKKTPRINVAGGDGFPSKVFFNGEECSLPLVFPSSGLRMEFSLVTMMFLILLPIIFMWQ* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2101 648 Pfam COBRA-like protein 224 403 IPR006918 GO:0010215|GO:0031225
Apr1g2101 648 PANTHER COBRA-LIKE PROTEIN 7 1 646 - -
Apr1g2101 648 PANTHER COBRA-LIKE PROTEIN 7 1 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2101 Apr-Chr1 30548766 30551688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2101 35 632 COBRA Gene Family AT4G16120 63.682 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2101 - - gmx:100778971 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2101 1 30548766 30551688 Apr1g2101 1 30548766 30551688 ECH
Apr9g2281 9 30541932 30544992 Apr1g2101 1 30548766 30551688 PCT