Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2099 ATGTCGTTGAGGCCCAATGCTAGGACGGAGGTTCGCCGCAACCGCTACAAGGTGGCCGTGGACGCCGACGAGGGTCGCCGGAGGCGGGAGGACAACATGGTGGAGATCCGCAAGAGCAAGCGCGAAGAGAGTCTCCAGAAGAAGCGCCGCGAAGGCCTCCAAGCTCAGCAGCAGTTCCCCACTCCTCTTCAAGCCTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCTGCCATGGTTGCTGGAGTCTGGTCTGATGATAATAGCCAGCAGCTGGAAGCTACTACTCAATTTCGGAAACTGCTTTCGATTGAACGCAGCCCTCCTATTGAGGAAGTTATTCAAGCTGGTGTTGTGCCTCGATTTGTCGAGTTTCTTGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTCCCGATATTTGTGAAGCTACTTAGTTCACCCAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCACTGGGAAACGTTGCTGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGCGCCCTGATCCCATTGTTAGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTCAGGAATGCCACATGGACCCTGTCAAACTTTTGCAGGGGCAAGCCACAGCCACCATTTGAACAGGTGAGACCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTTTTAACAGATGCATGCTGGGCACTGTCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTTTGTGGCAGATTGGTGCAGCTCCTTCTGCACCCTTCCCCATCAGTGTTGATACCTGCTCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATTCAGACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTCTTGAGCCTGTTGACACATAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACCATATCAAACATTACAGCTGGAAACAAAGAACAGATACAGGCTGTAATCGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAGGCAGCTTGGGCTATCTCAAATGCTACATCTGGTGGAACCCACGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCCGACCCAAGAATTGTGACTGTCTGTTTAGAAGGTCTTGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCTTGGGTAACTCTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGGTTGGAGAAAATAGAAAACCTGCAAAGTCACGACAACAATGAAATATATGAGAAGGCTGTTAAAATTCTTGAGACATACTGGTTGGAAGATGAAGATGAGACACTACCATCAGGTGATGGTGCACAACCTGGTTTTAATTTTGGAAGCAACGACCTTCCAGTCCCGTCTGGTGGATTCAACTTCAGTTGA 1596 0.4768 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQPGFNFGSNDLPVPSGGFNFS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2099 531 Gene3D - 11 50 IPR036975 GO:0006606
Apr1g2099 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Apr1g2099 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Apr1g2099 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Apr1g2099 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Apr1g2099 531 PANTHER IMPORTIN ALPHA 2 522 - -
Apr1g2099 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Apr1g2099 531 MobiDBLite consensus disorder prediction 37 59 - -
Apr1g2099 531 MobiDBLite consensus disorder prediction 502 531 - -
Apr1g2099 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Apr1g2099 531 Pfam Atypical Arm repeat 458 502 IPR032413 -
Apr1g2099 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Apr1g2099 531 SUPERFAMILY ARM repeat 6 502 IPR016024 -
Apr1g2099 531 Gene3D - 74 497 IPR011989 -
Apr1g2099 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Apr1g2099 531 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Apr1g2099 531 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Apr1g2099 531 SMART arm_5 190 232 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 106 147 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 149 189 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 275 315 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 234 273 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 403 443 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 360 400 IPR000225 GO:0005515
Apr1g2099 531 SMART arm_5 317 358 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2099 Apr-Chr1 30531617 30536049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2099 132 392 U-box Gene Family AT3G46510 25.573 6.07e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2099 K15042 - gmx:100808498 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2099 1 30531617 30536049 Apr1g2099 1 30531617 30536049 ECH
Apr1g2099 1 30531617 30536049 Apr8g1358 8 20794752 20800334 ECH
Apr9g2284 9 30568005 30572119 Apr1g2099 1 30531617 30536049 PCT