Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2096 ATGTCAGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTATTGAGGAGACACCAGAGGAAACAATTTTGTCAAGACAAACATCTGTCAATCTGGTTCCTTTTATTGGTCAAAGATTTGTTTCTCAAGAAGCTGCCTATGAATTTTACTGCAGTTTTGCTAAACAATGTGGCTTTTCTATTAGACGACACCGCACTCGAGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGATTTTACTTGTCATCGAGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCGTCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCTTCATATTGTCCTATATCGCCCGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCTATTGATTTGATTGCTATGTGCAAGAGATTGAAGGATGAAAACCATAATTTCAAGTATGAATTCAAGATAGATAGCAATAACAGGCTTGAGCATATTGCATGGTCTTATAGCTCATCCATTCAGTCGTACGAGGCATTTGGAGATGCTGTGGTTTTTGATACAACCTACCGAGTAGATGCTTATGACATGCTGTTAGGAATTTGGCTTGGCGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCTCTTCTAAGGGATGAAAACATGCAGTCTTTTTCATGGGCCCTAAAGGCTTTCTTGGGTTTCATGAAAGGAAAGGCTCCACAAACAATATTAACTGATCATAACATGTGGCTTAAAGAGGCTATAGCTGTTGAAATGCCTGAAACTAAACATGGCTTTTGTGTATGGCATATTCTTTCCAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCGCAATATGATGAGTGGAAAGCTGAGTTTCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGATGGAGGCAAATGGTTGATAAATACGGACTCCATGCAAATAAACATATTATTAGTCTATATTCATTAAAGACATTTTGGTCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAATCCGAGTCCATTAATGTTTTCATCCAACGGTTCTTGAGTGCTCAATCTCAACTAGATCGTTTTGTGGAACAAGTGGCTGATGTTGTTGATTTTAATGACCGTGCTGGAGCAAAGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGTACTCACTCCTTATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCACCACAATACGCATCCTTTCTGGTCGATGAAGGTTGTTTCCAAGTTAGACACCACTCTCAGACAGACGGAGGGTGCAAAGTATTGTGGGTTCCTTGTCAAGAGCACATTAGCTGCAGCTGTCATCTATTTGAGTTTTCTGGCATCTTATGTAGACATGTGCTACGCGTCTTGTCAACTAATAACTGTTTTCACATTCCTGATCAATATTTACCAGCCCGTTGGCGAGGCATCAATTCATTTTCTGTTAATCACTTCAGAGGTACAACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCCATGGTTTCTACACTTATAATGGAGTCCATTGAAACTGAGGAACGCCTTGATGTCGCTTGCGAGCAAATTTCCTTGGCGCTATCACGTATCAAAACCCTTCCTAGGTCCACACATGGGGTAAATGACATTGCATATAGTTATCCATCAGATTCATTGATCCTGCCAGAGGTAGAAGATACTGACGGAATGATTCATGGCTTTACAATTGCAAATCCCCATGATTCTATCAGTTTAGGAAAACTAAAGGAGAGAAGGGTGAGAGATGGAATTGATCTCACTAGGAAGCGTAGGCAATTCTCAGCACCATTGTGTACGCAATATGGACATGATGCTTCTGATTGCTCAATAATGGCAGGTGACAATATGAGTGGAGATGCATTAGGGTACTTATAG 2277 0.4115 MSEGTSLVLESSENGTDLSQDDIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPSYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVDAYDMLLGIWLGVDNNGMTCFFSCALLRDENMQSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVEMPETKHGFCVWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLKTFWSLPFLRRYFFAGLTSTCQSESINVFIQRFLSAQSQLDRFVEQVADVVDFNDRAGAKQKMQRKLQKVCLKTGSPIESHAATVLTPYALSKLQEELVLAPQYASFLVDEGCFQVRHHSQTDGGCKVLWVPCQEHISCSCHLFEFSGILCRHVLRVLSTNNCFHIPDQYLPARWRGINSFSVNHFRGTTSRDQPERIQFLESMVSTLIMESIETEERLDVACEQISLALSRIKTLPRSTHGVNDIAYSYPSDSLILPEVEDTDGMIHGFTIANPHDSISLGKLKERRVRDGIDLTRKRRQFSAPLCTQYGHDASDCSIMAGDNMSGDALGYL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2096 758 ProSiteProfiles Zinc finger SWIM-type profile. 539 587 IPR007527 GO:0008270
Apr1g2096 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 738 IPR031052 GO:0006355
Apr1g2096 758 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 738 - -
Apr1g2096 758 Pfam SWIM zinc finger 561 585 IPR007527 GO:0008270
Apr1g2096 758 SMART 26again6 562 589 IPR006564 GO:0008270
Apr1g2096 758 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g2096 758 Pfam MULE transposase domain 275 367 IPR018289 -
Apr1g2096 758 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2096 Apr-Chr1 30516084 30520179 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g2096 MULE 3.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2096 - - gmx:100778434 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2096 1 30516084 30520179 Apr1g2096 1 30516084 30520179 ECH