Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2093 ATGGGGAGAGCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAAATTTTGACCGATTACATACAGGAAAATGGTGAAGGATCATGGAAATCCTTGCCCAAAAATGCAGGTTTGTTGAGGTGTGGGAAGAGTTGTAGACTGAGATGGATCAACTATTTGAGAGCAGACGTGAAGAGAGGCAACATCACACCGGAGGAGGAAGAGATCATTGTCAAATTGCATGCTGTTCTTGGCAATAGGTGGTCTGTAATAGCAGGACATTTACCAGGACGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGAGGAGAAAGATTTATTGCTTCATGAGATCTTTAAATGAGTCTCTGCCACCCATTGACATGGCTATGGTGAATTGTGCTACCTCCAAGAGAAGAGGTAGAGGGACAAAAATTAAGGCAGCAATGGAGGAGGACAAGAGCATGGCTTTGAGCCAAAACTCCTTTGAATCAATGCCAAGTTGTTATAGAGAAGAAGCTGAAGAAATTTCGATGATGGATACTAATTATGAAATGGAGGGCAACATAAGTAGTACAGTTGCATCATACCCCATTATGAATGGGGATATTGAAGGCTTGGGACCATGTCAATATTGGTCAAATGATGAAATTATGAAACTTAGTCTCATGTTTGAAAATGGGGTACTTGTAAATCCAAGTGGTAATGCTAGTGTAACCCTTAATGAGGAACCTAATGGGAATGAGTGTGGGCAAAATGTGCATGTGGGTATAATGGGAACAAGTCAAGAAAGCAAGATTGGTGTTTGGGACTCGTCAAATGTGGAGAGTGGACAGTGGTACACAAGCTGTTCATCGGTGAATTCTGCCATTGATTATCAAGGGTCTGATTGGGACATGGCAGGTAGTGTTCAATCCTATAATCAATGGGACCTTTGTGAAGAAGACCAAATGATGACTTGCTTGTGGGGCACTGGCATTGGTGAAATAAATGGTTTTCATCAGTAA 1017 0.4149 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWKSLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAMVNCATSKRRGRGTKIKAAMEEDKSMALSQNSFESMPSCYREEAEEISMMDTNYEMEGNISSTVASYPIMNGDIEGLGPCQYWSNDEIMKLSLMFENGVLVNPSGNASVTLNEEPNGNECGQNVHVGIMGTSQESKIGVWDSSNVESGQWYTSCSSVNSAIDYQGSDWDMAGSVQSYNQWDLCEEDQMMTCLWGTGIGEINGFHQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2093 338 PANTHER MYB TRANSCRIPTION FACTOR 2 300 - -
Apr1g2093 338 CDD SANT 16 61 IPR001005 -
Apr1g2093 338 Gene3D - 13 66 - -
Apr1g2093 338 Gene3D - 71 116 - -
Apr1g2093 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr1g2093 338 SMART sant 13 63 IPR001005 -
Apr1g2093 338 SMART sant 66 114 IPR001005 -
Apr1g2093 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr1g2093 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr1g2093 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr1g2093 338 CDD SANT 71 112 IPR001005 -
Apr1g2093 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr1g2093 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g2093 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 300 - -
Apr1g2093 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2093 Apr-Chr1 30477799 30481796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2093 1 315 MYB Transcription Factor Family AT5G49330 45.161 1.04e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g2093 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2093 K09422 - gmx:100819041 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2093 1 30477799 30481796 Apr1g2093 1 30477799 30481796 ECH