Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2088 ATGGCACACAAGTTAACGGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCACACGTTGCGTGATCTGGATGTTGGGAACACTATGGAAGAAGCAAAAGGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTTTGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAATTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCCCATGAGCACTTAAAAGTTGGCAATGAAGAAAGGATACACGTTTATTATGCACATGGCCAAGATAACCCAAGCTTTGTCCGTAGGTGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTTACGCCTGTAAATTCAAATTCAAGTTCTGTCTCTGATCCAACTGCACCATGGATTCCATCAGAAGACTTGGATTCTGGGACAAACAGTGCTTATGTTGGGCTTAATGACAATTTAACAGTCAAAAGTCATGAACAGAGGCTTCATGAGCTTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGTCAACAGCTCTACCACTCCAAATGGAGGCAATGTTCCATGTTTGTATCAACAAAATCAAAGTTTATTAAATGGAAGCTTTGGCAATGTACCCAGTAATCTGTCTGCAGAAGTTCATTCTTATGGTAATTTAACTCTGCCAATTTCTGGGAGCAATAGTGTTGCTTACAGTTTCCAAGAAGATATTAATCTTCCTAAGAATGTTCCCATCTCTGCGGATGGTGTTGAATCTGTTGATACCGTGGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGTTTTAGAATGTGGATGAACGTCATATCAGATACGCCATGTTCCCTAGATGAGTCACCTCTTGAATCATCAATTTCTTCTATTCAGGAACCATATTCGTCACTGGTGGCAGATAATCTGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTACATGGGCATCTTCCACCGAGAAAACAAAGGTCCTGGTAACTGGATTCTTCCATAGTAACTACCAACACCTTGCCAAGTCCAATCTACTTTGTGTCTGTGGTGATGTAAGTGTTCCAGTAGAAATTGTTCAGGTTGGGGTTTACCGATGCTGGGTATCTCCACATTCTCCTGGATTGGTGAATCTCTATTTGAGCTTTGATGCTCATAAGCCGATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATGTTGCATGATCCCACTGCTTCAATGGAAGAGAAACACAACTGGAATGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTACAGAAAAGACCCTCAACATTTTCTCGAGTAAAGTATCACTTAATGCACTGAAAGAGGCTAAAAAATTTTCCTCTAAAACATCATTTATTTCCAGAAATTGGCAATACTTGATGAAGTCTATTGATAACAATACAACTCCATTTCCACAAGCAAAAGATACCTTGTTTGAAATTTCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTGTCTTAGGCTGCAAGACTACTGAATATGATGCGCAGGGCCAAGGTGTTATTCATTTGTGTGCAATGCTAGGCTATACTTGGGCTATTTCCTTATTTTCTTGGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATTTTGGATCGTATGATACATGGATACTCCTCTTGTTTGAACATTTAGCTATGCTGGAGAAAATGGTTGCTACTCTGTTGTCTTGTGGAGCCAGGCCAAACTTGATCACCGATCCAACTCCACAAAATCCTGCTGGATGTACTGTTGCTGATCTTGCTTACACAAAGGGACATGATGGCTTAGCAGCATACCTTTCAGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCACACTGGAAACTAGTTCAACTGATGCAGTAAATCCTGAGAACCTCACTGAGGACCAACTGTACCTAAAGGAGACATTGGCAGCTTACAGAACAGCTGCTGAGGCTGCAGGACGCATTCAAGCTGCTTTTAGGGAGCGCTCACTGAAATTGCAATCTAAGGCAGTTGAATTTTGCAGCCCAGAGGATGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAAGAAAATGATGGCTGCCGCTGCTCGGATTCAGCATACATTCCGTACATGGAAGTACCGTAGAGAATATCTCCACATGCGGCGTCAGGCTATCAAAATTCAAGCTGCTTTCAGGGGTTTTCAAGCGCGGAAGCAATATTGTAAAATCATATGGTCGGTTGGGGTGCTTGAGAAAGCAATCCTGCGATGGCGTTTAAAGAGAAAAGGATTCCGTGGTCTCCAAGTTAATGCTGCCCAAGAAATGGAAGATGAGAAGCAGGAAAGTTGTGTTGAGGAAGATTTCTTTCGGGCTAGTAGGAAACAAGCTGAAGAACGAGTTGAACGGTCTGTTGTTCGTGTACAGGCCATGTTCCGGTCTAAGAAAGCACAAGAAGAATATAGAAGAATGAAGCTGGCACATAATCAAGCAAAGCTGGAATTGGAATTAGAAGAATTCCTCAATTCTGAAGTTGACATCTTAACACCGAGGACAACATTCCCAAAAGATGGTTCCTATTAA 2757 0.42 MAHKLTGQLVGSEIHGFHTLRDLDVGNTMEEAKGRWLRPNEIHAILCGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSSSVSDPTAPWIPSEDLDSGTNSAYVGLNDNLTVKSHEQRLHELNTLEWDDLVVSNVNSSTTPNGGNVPCLYQQNQSLLNGSFGNVPSNLSAEVHSYGNLTLPISGSNSVAYSFQEDINLPKNVPISADGVESVDTVGTLVNEGLQSQDSFRMWMNVISDTPCSLDESPLESSISSIQEPYSSLVADNLQSSLPEQVFNLTEVSPTWASSTEKTKVLVTGFFHSNYQHLAKSNLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGLVNLYLSFDAHKPISQVVNFEYRTPMLHDPTASMEEKHNWNEFRLQMRLAHLLFATEKTLNIFSSKVSLNALKEAKKFSSKTSFISRNWQYLMKSIDNNTTPFPQAKDTLFEISLKNKLKEWLLERIVLGCKTTEYDAQGQGVIHLCAMLGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYFGSYDTWILLLFEHLAMLEKMVATLLSCGARPNLITDPTPQNPAGCTVADLAYTKGHDGLAAYLSEKSLVEQFNDMSLAGNISGTLETSSTDAVNPENLTEDQLYLKETLAAYRTAAEAAGRIQAAFRERSLKLQSKAVEFCSPEDEARQIVAAMKIQHAFRNFETKKMMAAAARIQHTFRTWKYRREYLHMRRQAIKIQAAFRGFQARKQYCKIIWSVGVLEKAILRWRLKRKGFRGLQVNAAQEMEDEKQESCVEEDFFRASRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELELEEFLNSEVDILTPRTTFPKDGSY* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2088 918 SUPERFAMILY Ankyrin repeat 515 654 IPR036770 -
Apr1g2088 918 ProSiteProfiles IQ motif profile. 860 888 IPR000048 GO:0005515
Apr1g2088 918 ProSiteProfiles CG-1 DNA-binding domain profile. 25 134 IPR005559 GO:0003677
Apr1g2088 918 ProSiteProfiles IQ motif profile. 756 785 IPR000048 GO:0005515
Apr1g2088 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 905 - -
Apr1g2088 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 806 IPR027417 -
Apr1g2088 918 SUPERFAMILY E set domains 341 428 IPR014756 -
Apr1g2088 918 Gene3D Immunoglobulins 336 431 IPR013783 -
Apr1g2088 918 SMART iq_5 778 800 IPR000048 GO:0005515
Apr1g2088 918 SMART iq_5 755 777 IPR000048 GO:0005515
Apr1g2088 918 SMART iq_5 858 880 IPR000048 GO:0005515
Apr1g2088 918 Gene3D - 511 661 IPR036770 -
Apr1g2088 918 Gene3D - 753 803 - -
Apr1g2088 918 Coils Coil 872 892 - -
Apr1g2088 918 ProSiteProfiles IQ motif profile. 779 803 IPR000048 GO:0005515
Apr1g2088 918 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 905 - -
Apr1g2088 918 Pfam CG-1 domain 48 127 IPR005559 GO:0003677
Apr1g2088 918 Pfam IQ calmodulin-binding motif 781 799 IPR000048 GO:0005515
Apr1g2088 918 SMART CG_1_2 29 129 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2088 Apr-Chr1 30411961 30420834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2088 29 892 CAMTA Transcription Factor Family AT3G16940 54.392 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Apr1g2088 CG-1 3.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2088 K21596 - gmx:100819198 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2088 1 30411961 30420834 Apr1g2088 1 30411961 30420834 ECH
Apr9g2294 9 30648912 30657231 Apr1g2088 1 30411961 30420834 PCT