Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2060 ATGGCGTCTGCAAGTGGAGCAGCGAATTCCTCAATTCCGACGCAAATTCACAGTTCGAGAACGAAGCGAAGCCACCACAGCATCGATTCGATGAGCAAAGCGATAGCGCAGTACACAGAAGATGCGAGGCTCCACGCCGTGTTCGAACAATCCGGCGAGTCAGGAAAATCCTTTGACTATTCACAATCGCTTCGTGTCACGTCGGAATCGGTGCCGGAGCAGCAAATAACCGCTTACCTTCTCAAAATCCAGCGTGGCGGTTTTATCCAACCATTCGGTTCCATGATCGCCGTCGACGAACGCTCCTTTCGCATCCTCGCCTACTCCGAAAACGCTCGCGACATGCTCGGAATTACTCCTCAGTCCGTTCCCTCTCTCGACGACGACAAGCTCGAACCCTTCGCTCTCGCCACCGATGTTCGCTCTCTCTTCACTCCGTCCAGCGCGTTGCTTCTCGAGAAGGCTTTCACCGCGCGTGAAATTAGCCTCATGAACCCTATTTGGATCCATTCTAGAACCTCCGGTAAGCCTTTCTATGGTATCCTTCACCGAATTGACGTTGGTATTGTCATTGATTTGGAACCTGCGCGTACGGAAGATCCTGCACTTTCCATTGCAGGTGCGGTGCAGTCGCAGAAGCTTGCGGTTCGCGCCATTTCGCAGCTTCAGTCTCTTCCTGGAGGAGATGTTAAGCTTCTTTGTGACACTGTTGTTGAGAGTGTTAGGGAATTGACAGGGTATGATAGGGTTATGGTGTATAGGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAAGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCGCCTGTGAGGGTGGTTCAGGATGAGGCTCTTGTGCAGCCTCTGTGTTTGGTTGGGTCTACGCTTCGTGCTCCACACGGTTGTCATGCTCAGTACATGGCAAATATGGGGTCGATTGCTTCGTTGGTTATGGCTGTTATTATTAATGGGAATGATGAGGAAGGTGTTGGAGGTCGGAGTTCCATGAGGCTTTGGGGGCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCCTTGAGGTATGCTTGTGAGTTCTTGATGCAGGCGTTTGGGCTGCAGTTGAATATGGAGCTTCAGTTGGCAGCGCAGTCATTGGAGAAACGGGTTTTGAGAACGCAGACGCTCTTGTGTGACATGCTTCTTAGGGACTCTCCTACTGGCATTGTTACTCAGACTCCTAGTATTATGGACTTGGTCAAGTGTGATGGAGCTGCTCTTTACTACCAAGGAAATTACTGCCCGTTGGGTGTCACCCCGACAGAGTCTCAGATAAGGGATATCATTGAGTGGCTGTTGGCCTTCCATGGAGATTCGACGGGTTTGAGTACTGATAGTCTGGCTGATGCTGGCTATCCTGGGGCTGCCTCGCTAGGGGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACGGAAAAGGATTTTCTTTTCTGGTTTCGGTCCCACACAGCAAAAGAGATCAAATGGGGTGGGGCAAAGCATCACCCAGAGGACAAGGATGATGGGCAGCGAATGCATCCTCGTTCTTCGTTCAAGGCTTTTTTAGAAGTGGTAAAAAGCCGTAGTTTGCCGTGGGAGAATGCAGAAATGGATGCTATTCACTCTTTGCAGCTTATTCTGCGTGACTCATTTAAGGATGCTGAGCAAAGCAATTCTAAGGCTGTTGTGCATTCCCATTTGGTGGAACTAGAGTTGCAAGGGGTAGATGAACTAAGCTCGGTGGCCAGAGAGATGGTTAGGTTGATAGAAACAGCCACTGCTCCCATATTTGCTGTTGATTTTGATGGCAACATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGAGGATGCTATGGGGAAGTCCTTGGTCCACGATCTTGTGTTCAAGGAGTCTGAAGAAACAGTGGGCAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAAGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTAGTCAAAAAATTGTGATGGACAAATTCATCAACATACAGGGTGACTACAAGGCTATTATACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTAACTGGTTGGGGTCGTGTGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCAATAACAAAGTTCATGATTGTCTTGCATAATGCGCATGGGGGACAAGATACTGATAAATTCCCTTTTTCATTTCTCGACCGTCATGGAAAGTATATACAAACTTTCCTGACTGCAAATAAGAGGGTTAACATGGATGGCCAGATCATTGGTGCTTTTTGCTTTTTGCAAGTTGTGACTCCTGAACTTCAACATGCACTAAAGGCCCAGAGACAACAAGAAAAGAATTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACAGGCTTGACCGATGAGCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGTGACGTTGATCTTGAAAGAATCGAAGATGGGTCCCTGGAGCTTGAAAAGGGTGAATTCATGCTTGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTAGCTGTTTATGGTGATCAATTGAGGATTCAACAAATTTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGACGGCTGGGTAGAGATTCATGTACGTCCAAGAATAAAACAAATTTCAGATGGGCTCACCCTTCTCCATGCTGAATTTAGGATGGTATGTCCAGGTGAAGGTCTTCCTCCTGAATTGGTTCAAGACATGTTCCATAACAGTCGGTGGGCGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGTTAATGAACGGTGAAGTCCAATATATCAGGGAGGCAGAACGTTGCTACTTCTTTGTTCTTCTTGAACTACCCTTGACACGGAAAAGCTCTAAAAAATGTTAA 3393 0.4548 MASASGAANSSIPTQIHSSRTKRSHHSIDSMSKAIAQYTEDARLHAVFEQSGESGKSFDYSQSLRVTSESVPEQQITAYLLKIQRGGFIQPFGSMIAVDERSFRILAYSENARDMLGITPQSVPSLDDDKLEPFALATDVRSLFTPSSALLLEKAFTAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQTPSIMDLVKCDGAALYYQGNYCPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEQSNSKAVVHSHLVELELQGVDELSSVAREMVRLIETATAPIFAVDFDGNINGWNAKVSELTGLPVEDAMGKSLVHDLVFKESEETVGKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIIHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRVDVIGKMLVGEVFGSCCQLKGSDAITKFMIVLHNAHGGQDTDKFPFSFLDRHGKYIQTFLTANKRVNMDGQIIGAFCFLQVVTPELQHALKAQRQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMLKIIRDVDLERIEDGSLELEKGEFMLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQILADFLLNMVRYAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELVQDMFHNSRWATQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPLTRKSSKKC* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2060 1130 Gene3D PAS domain 620 744 - -
Apr1g2060 1130 SMART HKATPase_4 1009 1124 IPR003594 -
Apr1g2060 1130 CDD HisKA 897 957 IPR003661 GO:0000155|GO:0007165
Apr1g2060 1130 Gene3D PAS domain 769 878 - -
Apr1g2060 1130 Gene3D PAS domain 82 332 - -
Apr1g2060 1130 CDD PAS 767 877 IPR000014 -
Apr1g2060 1130 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Apr1g2060 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 17 1125 - -
Apr1g2060 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1120 IPR036890 -
Apr1g2060 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 197 IPR035965 -
Apr1g2060 1130 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Apr1g2060 1130 MobiDBLite consensus disorder prediction 1 18 - -
Apr1g2060 1130 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Apr1g2060 1130 SUPERFAMILY GAF domain-like 415 592 - -
Apr1g2060 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1122 IPR003594 -
Apr1g2060 1130 ProSiteProfiles Histidine kinase domain profile. 904 1124 IPR005467 -
Apr1g2060 1130 SMART pas_2 82 149 IPR000014 -
Apr1g2060 1130 SMART pas_2 755 825 IPR000014 -
Apr1g2060 1130 SMART pas_2 624 691 IPR000014 -
Apr1g2060 1130 Gene3D - 412 585 IPR043150 -
Apr1g2060 1130 PANTHER PHYTOCHROME 17 1125 - -
Apr1g2060 1130 SMART gaf_1 229 417 IPR003018 GO:0005515
Apr1g2060 1130 Pfam PAS fold 756 876 IPR013767 GO:0006355
Apr1g2060 1130 Pfam PAS fold 625 740 IPR013767 GO:0006355
Apr1g2060 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Apr1g2060 1130 CDD PAS 633 740 IPR000014 -
Apr1g2060 1130 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Apr1g2060 1130 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Apr1g2060 1130 Gene3D - 210 568 IPR029016 -
Apr1g2060 1130 Pfam GAF domain 230 407 IPR003018 GO:0005515
Apr1g2060 1130 SUPERFAMILY GAF domain-like 209 404 - -
Apr1g2060 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 629 737 IPR035965 -
Apr1g2060 1130 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
Apr1g2060 1130 Gene3D - 879 960 - -
Apr1g2060 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Apr1g2060 1130 Pfam PAS fold 78 196 IPR013654 GO:0006355
Apr1g2060 1130 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Apr1g2060 1130 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 887 961 IPR036097 GO:0000155|GO:0007165
Apr1g2060 1130 PIRSF Phytochrome_conventional 9 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Apr1g2060 1130 Gene3D - 961 1127 IPR036890 -
Apr1g2060 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Apr1g2060 1130 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Apr1g2060 1130 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2060 Apr-Chr1 30096419 30103569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2060 3 1122 Histidine Kinase Gene Family AT4G16250 74.647 0.0 1757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2060 K12121 - gmx:100799831 2111.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2060 1 30096419 30103569 Apr1g2060 1 30096419 30103569 ECH