Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2059 ATGGGTACCCCAGAAGAAGAACAAGAGCTTCACAAGAAGATACAACGGCTAGAAGTTGGTCACCTTCATCTTAAGCATCAAATGTCCAAGCTCAAGCACCGTTCAGAGTTAGGTGCGACGTGTAACAAACCATCTTATTTGCCCTTGCAGAGAGAGAATCGTAGTCATGGCCATTATCTCAATATTTTGCAGTCAATGGGTCATTCTGTTCATATTTTGGATCCTCAATGTCGTATCATTTTCTGGAACCCTAGTGCTGCAAATCTGTATGGTTATGCAGCAGATGAAGTTCTTGGGCATGATGGGATTGAGTTGCTTGTGGATCCAAGGGATTTTGCTTTAGCCAATGATGTATTCAACCATGTCAAAATGGGAGGAAGTTGGAGGGGGAAATTCCCTGTTAAGAATAAGATGGGGGATAGGTTCTTAGCCGTGGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTGGTTGGGGTTATATGTGTCTCATGTGACTCACGGCCATTTCTTGAAACCATAATGCCCTTTTCAGGTGTTAAGAATGAAGAGGCGGATTCGGGTTCTAACCGGCTTAAGAGTAGCATTACGGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCATCCAAAATTTCAAATTTGGCGTCAAAAGTGAGTAACAAAGTTAAGTCTAGAATCCGGACTAGGGAAAATAATGTTGACAGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAGCATAGTTTCTCGGACTGCATTCTTTCTGACCAGAGAGAGGATGGTAATTCCAGTGGAGCTAGCACACCGAGAGAAGAGGTGCTACAATCTCCGTTTGGTCATGCTGAAGAAAAATCCCAAGGAAGAACTATGAGAGACTCAGGTGATCGGAGTGAAGGAAAACCTATTCACAAGATGATAACTTCTAGAGCTGAAACATGGATTCAAAAGAAAGCATTGTCATGGCCATGGAGAGCAAATGATCGGGAAGGATCTGATGCAAGGAATGTTCATGTTGCTTGGCCTTGGTTGCCAGGTGATCAAGAAAATGAGTCAATTAATCAGAAGAATATTTCTTCTGGGTTGAAGCCAGACAGCCAGACAGGCAAAACTAATCAGCCTGTTAATAATGAGGCTTTAGGATCCTGGTCATCCTTTAATGTTAACAGCACAAGTAGTAACAGCAGCTGTGGGAGTGGCAGCAGTTCTGCCGCCAATAATAAAGTGGATGTTGACTCTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACCAATTGGGCAAGGTTCTTGTGGAATTGTATATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTATTCTCAAAGCAAGAGTATTCAGATGATGTGCTACTGTCCTTCAGACAAGAGGTATCTATGATGAAAAGACTTCGTCATCCAAATGTTATTCTCTTTATGGGGGCTGTAACTTCACCTCAACGTCTATGCATTGTAACAGAATTTCTCCCACGAGGAAGCTTGTTTCGTTTGCTTCAGAGAAACACATCCAAATTAGAGTGGAGAAGGCGGGTTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTCCATCATTGCAACCCCCCTATCATCCATCGAGATTTAAAGTCTTCAAATATTCTTGTTGACAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAGCATGAAACATATCTCAGTACTAGGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAGGTTCTTCGTAATGAACTGTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTTGCAACTGAAAAGATCCCGTGGGATAGTCTCAACCCAATGCAGGTTATTGGAGCTGTTGGATTTATGAACCATCGGCTGGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGAGAGCTGCTGGCAAAGATTTCTGAATAATTTAGGTCAGTATATTTTTGAGATTCAATTTCAATGCAAAGTATATAATAGGCTGATACGTATCATTTTGTTGGATTGA 2091 0.4237 MGTPEEEQELHKKIQRLEVGHLHLKHQMSKLKHRSELGATCNKPSYLPLQRENRSHGHYLNILQSMGHSVHILDPQCRIIFWNPSAANLYGYAADEVLGHDGIELLVDPRDFALANDVFNHVKMGGSWRGKFPVKNKMGDRFLAVATNTPFYDDDGSLVGVICVSCDSRPFLETIMPFSGVKNEEADSGSNRLKSSITDKLGLDSQQPLQVALASKISNLASKVSNKVKSRIRTRENNVDSEGGSGESHHSEHSFSDCILSDQREDGNSSGASTPREEVLQSPFGHAEEKSQGRTMRDSGDRSEGKPIHKMITSRAETWIQKKALSWPWRANDREGSDARNVHVAWPWLPGDQENESINQKNISSGLKPDSQTGKTNQPVNNEALGSWSSFNVNSTSSNSSCGSGSSSAANNKVDVDSDCLDYEILWEDLTIGEPIGQGSCGIVYHALWYGSDVAVKVFSKQEYSDDVLLSFRQEVSMMKRLRHPNVILFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKLEWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLSTRTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELATEKIPWDSLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWQRFLNNLGQYIFEIQFQCKVYNRLIRIILLD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2059 696 Gene3D Transferase(Phosphotransferase) domain 1 509 671 - -
Apr1g2059 696 MobiDBLite consensus disorder prediction 353 384 - -
Apr1g2059 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Apr1g2059 696 TIGRFAM sensory_box: PAS domain S-box protein 55 164 IPR000014 -
Apr1g2059 696 SUPERFAMILY Protein kinase-like (PK-like) 418 667 IPR011009 -
Apr1g2059 696 MobiDBLite consensus disorder prediction 261 277 - -
Apr1g2059 696 MobiDBLite consensus disorder prediction 229 260 - -
Apr1g2059 696 MobiDBLite consensus disorder prediction 350 384 - -
Apr1g2059 696 Gene3D PAS domain 68 169 - -
Apr1g2059 696 CDD PAS 70 167 IPR000014 -
Apr1g2059 696 CDD STKc_MAP3K-like 436 667 - -
Apr1g2059 696 ProSiteProfiles PAS repeat profile. 55 126 IPR000014 -
Apr1g2059 696 Pfam Protein tyrosine and serine/threonine kinase 430 667 IPR001245 GO:0004672|GO:0006468
Apr1g2059 696 MobiDBLite consensus disorder prediction 290 311 - -
Apr1g2059 696 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 666 - -
Apr1g2059 696 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 164 IPR035965 -
Apr1g2059 696 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 58 666 - -
Apr1g2059 696 MobiDBLite consensus disorder prediction 226 315 - -
Apr1g2059 696 Gene3D Phosphorylase Kinase; domain 1 423 507 - -
Apr1g2059 696 SMART serkin_6 430 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2059 696 SMART pas_2 57 124 IPR000014 -
Apr1g2059 696 Pfam PAS domain 70 165 IPR000014 -
Apr1g2059 696 ProSiteProfiles Protein kinase domain profile. 430 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2059 Apr-Chr1 30082792 30092440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2059 8 683 MAP Kinase Kinase Kinase AT3G06620 53.785 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Apr1g2059 PK_Tyr_Ser-Thr 8.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2059 - - gmx:100815858 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2059 1 30082792 30092440 Apr1g2059 1 30082792 30092440 ECH
Apr9g2315 9 30803429 30810012 Apr1g2059 1 30082792 30092440 PCT