Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2056 ATGGATTATCCATCGTGGTCCTCTTTGCATGCTTCAACATTCATCATAGTGGCAATTCCCATTTTCTTATTGTTTTGCATGCCATTTTGTGCTCATGCCCTTGATGCACAAACGGTCGCTGACTCTCCTTTGTTAACACAAAAGTTGGGAATTAATCGCACTATCAAAGTAGATATCAATGGTGATGGAGAGTTCGCATCTATACAAGCTGCCATTGATTCCATTCCCGAAGGAAATTCTAATTGGATCATCGTCCATGTTAGGAAAGGAGTATACAGAGAAAAGGTGCACATACCAAAGACTAAGCCCTTTATATTCTTGAGAGGGAATGGAAGAGGAAAAACTGCCATAGTTTGGTCTCAAAGCTCTTCTGACAACAAGGCTTCTGCTACCTTCAAAGCCGAAGCCTCTGACTTCATTGCCTTTGGAATAAGCATCAAGAACGAGGCACCTACAGGGGTTGCCTATACCTCGCAGAATCAATCGGTGGCAGCTTTTGTGGCAGCAGACAAAGTGGCATTTTATCACTGTGCATTTTACAGTACTCATAACACACTCTTCGATTACAAGGGTAGACATTACTATGAGTCCTGCTACATTCAAGGCTCAATTGATTTCATATTTGGACGTGGAAGATCGGTCTTCCATAGCTGTGAGATATTTGTGATTGATGACAAAAGGATAAGCATTCATGGGTCAGTCACAGCTCAAAACAGGGAAAGCGAACCTGAGATTAGTGGCTTTATTTTTATCAAAGGCAAGGTTTATGGGGTTGGTGGGGTGTACTTAGGAAGGGCCAAGGGTCCTTATTCTAGGGTCATTTTTGCCCAGACATATCTCTCCAAGACCATTGTCCCGGAGGGGTGGACCAATTGGAGCTATGCTGGTAGCACACAAAATCTTTACCATGCTGAGTACAAGTGCCATGGACCTGGAGCCATTACGGAGGGACGCGCTTCTTGGTCAAGGCAGCTATCAGACGAGGAAGCTGCACCCTTTTTATCTATTGATTACATTGATGGCAAGAATTGGTTGCCAGTATGGCTATGA 1050 0.4381 MDYPSWSSLHASTFIIVAIPIFLLFCMPFCAHALDAQTVADSPLLTQKLGINRTIKVDINGDGEFASIQAAIDSIPEGNSNWIIVHVRKGVYREKVHIPKTKPFIFLRGNGRGKTAIVWSQSSSDNKASATFKAEASDFIAFGISIKNEAPTGVAYTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSVFHSCEIFVIDDKRISIHGSVTAQNRESEPEISGFIFIKGKVYGVGGVYLGRAKGPYSRVIFAQTYLSKTIVPEGWTNWSYAGSTQNLYHAEYKCHGPGAITEGRASWSRQLSDEEAAPFLSIDYIDGKNWLPVWL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2056 349 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Apr1g2056 349 Gene3D - 49 348 IPR012334 -
Apr1g2056 349 Pfam Pectinesterase 56 341 IPR000070 GO:0030599|GO:0042545
Apr1g2056 349 PANTHER PECTINESTERASE 67-RELATED 16 348 - -
Apr1g2056 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 348 - -
Apr1g2056 349 SUPERFAMILY Pectin lyase-like 51 347 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2056 Apr-Chr1 30073729 30075820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2056 52 345 Carbohydrate Esterase AT5G47500 38.816 5.73e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2056 - - gmx:100792967 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2056 1 30073729 30075820 Apr1g2056 1 30073729 30075820 ECH