Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2053 ATGCTCCATGCATTGATGAGTCTTATCACTCGCTGTTGGAAGCCGTTCGGGCAAGGTGACGAAGGCAATGCCGGAAGAGAATGCAAGGACGGTTTGCTTTGGTTCCGCGATATCGGAAAGTTCGCCGCCGGAGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTCCTCGAAGACCAGAGCCAGATCGAGTCTGGCACTTTCGGAACCTTCGTCGGCGTTTACGACGGCCACGGTGGCCCCGATGCTTCGCGATACGTTTGCGATAACTTGTTCCGCAATCTCCAAGCGATATTGGCTGAGTCACGGAGTGTTGTGACGACTGAGACCATTCAACAAGCGTTTCTCCGAACCGAAGAGGGGTTCACAGCCCTTGTTTCCGAATTGTGGAATATTCGGCCTCAGATTGCCACTACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCAGCAGACACTGTTTGTGGCAAATCTTGGAGATTCCCGCGCTGTGTTGGGTAGGAAAGTCGGCAACACCGGTGGGATGGCTGCAATTCAGTTGTCTACGGAGCACAATGCAAATATTGAGGCTATTAGGCAGGAACTTAAGGAACTACACCCTAATGATCCCCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATTGGTGACGTATATATGAAACATGCGCAGTATAACCAGGAACCCATTAATCCAAAATTCAGACTTCCAGAACCAATGAACATGCCTTACTTGTCTGCTAATCCAACTATTTTTTCTCATCGTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCCCGAGCCGGTAGTGCCAAGAGACTTGTCAAGGCTGCCCTACACGAAGCAGCAAGAAAACGTGAAATGCGATATTCAGACCTTTACAAGATTGACAAGAAGGTTCGACGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCATGATCTTATATCCAGAGGCGCAGTTCTAAATCCGCCACTCACAGTTCGAAGTGCACTCGATCACTGA 1110 0.473 MLHALMSLITRCWKPFGQGDEGNAGRECKDGLLWFRDIGKFAAGDFSMAVVQANQVLEDQSQIESGTFGTFVGVYDGHGGPDASRYVCDNLFRNLQAILAESRSVVTTETIQQAFLRTEEGFTALVSELWNIRPQIATTGTCCLVGVICQQTLFVANLGDSRAVLGRKVGNTGGMAAIQLSTEHNANIEAIRQELKELHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQYNQEPINPKFRLPEPMNMPYLSANPTIFSHRLQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLVKAALHEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNPPLTVRSALDH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2053 369 CDD PP2Cc 46 346 IPR001932 -
Apr1g2053 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Apr1g2053 369 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 369 - -
Apr1g2053 369 Pfam Protein phosphatase 2C 70 316 IPR001932 -
Apr1g2053 369 Gene3D - 39 354 IPR036457 -
Apr1g2053 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Apr1g2053 369 SMART PP2C_4 39 344 IPR001932 -
Apr1g2053 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Apr1g2053 369 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2053 Apr-Chr1 30054728 30060483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2053 1 366 PP2C-type Phosphatase Gene Family AT4G38520 58.311 7.81e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2053 K01102 - gmx:100814799 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2053 1 30054728 30060483 Apr1g2053 1 30054728 30060483 ECH
Apr9g2320 9 30841027 30845103 Apr1g2053 1 30054728 30060483 PCT