Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2048 ATGGAGGAGGAGAAAAGAGAAGAGGAAGCACACCCCAACAACTCATCATCCACCACCATGGCATTTTCCGACGAGATTCCGAACAACTTGAGTTACCCTTTTCAACCAACATCATCCACCATCTTTGACATCATTCCATCTTCTTCCTGCGACCAAAAAGCTTCGTCTTTTGGCTTCATGGACTTGTTGGGTGTCCACGATTACAACGCTCCTTTATTCGATTGGCTTCCCGCCGCCCCCTCATCCCCCACCGTCACCGTCAACCCTGACTCCTCCGAGGTGCTGAACATCCCGGCATCTCCCAATTCGTCTTCGATTTCTTCGTCTTCGAATGAAGCCACAATCCACAACACCAACCAACAGCAGAGTGGTAAACCACAGAATGAACACGAAGAAGCAGAAGCAGAGGAAGACGGTGGTAATGGAGCTAGAAGAGAGGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCTTTCATGACAAAGAGCGAGGTGGATCACTTAGACGATGGTTATAGGTGGCGAAAGTACGGGCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGATGACCCTTCCGTCGTGGTAACCACCTACGAGGGCCAACACACCCACCCGTGCCCTGCCACGTCACGGGCTAGCCTCGGCTTCATGCACGAACCGGGTGGGTTCGGACCCACCGGTTTGGTTGGTGGCGGTTCTCTTGGGTCCCCACACTTTGTGCTGCCACATCAGCATCAGTTTCATCAGCAGCAGAACGTCTCACAAGCATCGGCTTTGATATATAACTCCACCCCTCCTTTGAGTGTTGTTAGCTCCAACAGTAACTACATGAACACGACGTCGTTTGGTGGCTTTGGTGGTTTTGGGCCTGTTCATGAGGCTTTGTTAAGGGATAATGGGCTGCTTCAGGACATTATTGTGCCAACGCAGGTGAGGAAGGAGGAAAGGGATTGA 1062 0.5122 MEEEKREEEAHPNNSSSTTMAFSDEIPNNLSYPFQPTSSTIFDIIPSSSCDQKASSFGFMDLLGVHDYNAPLFDWLPAAPSSPTVTVNPDSSEVLNIPASPNSSSISSSSNEATIHNTNQQQSGKPQNEHEEAEAEEDGGNGARREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHPCPATSRASLGFMHEPGGFGPTGLVGGGSLGSPHFVLPHQHQFHQQQNVSQASALIYNSTPPLSVVSSNSNYMNTTSFGGFGGFGPVHEALLRDNGLLQDIIVPTQVRKEERD* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2048 353 Gene3D WRKY domain 170 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2048 353 MobiDBLite consensus disorder prediction 82 126 - -
Apr1g2048 353 SMART WRKY_cls 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2048 353 MobiDBLite consensus disorder prediction 13 33 - -
Apr1g2048 353 MobiDBLite consensus disorder prediction 127 156 - -
Apr1g2048 353 MobiDBLite consensus disorder prediction 82 175 - -
Apr1g2048 353 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g2048 353 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 343 IPR044810 GO:0003700
Apr1g2048 353 SUPERFAMILY WRKY DNA-binding domain 175 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2048 353 Pfam WRKY DNA -binding domain 184 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2048 353 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 58 343 - -
Apr1g2048 353 ProSiteProfiles WRKY domain profile. 178 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2048 Apr-Chr1 29984584 29986917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2048 153 350 WRKY Transcription Factor Family AT5G49520 53.140 3.08e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g2048 WRKY 3.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2048 - - gmx:100812252 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2048 1 29984584 29986917 Apr1g2048 1 29984584 29986917 ECH
Apr1g2048 1 29984584 29986917 Apr9g2326 9 30902620 30910276 PCT