Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2030 ATGGAAGTGAAAGGAAGGGTTATAAGCAACTCCAACACCATCATCCAAAGCGAGGATGAGATGGACCTTCGAAGAGGCCCTTGGACCGTTGATGAGGACCTTGCCCTTATCAATTACATTGCCAATCATGGAGAAGGTCGATGGAACTCCCTTGCCCGTTCTGCTGGACTCAAACGAACTGGGAAGAGTTGCAGATTGAGATGGTTAAATTATTTGCGTCCCGATGTTCGACGTGGCAACATAACACTTGAAGAACAACTTTTAATTCTCGAGCTTCATGGTCGCTGGGGAAACCGATGGTCCAAAATTGCTCAATATTTACCGGGAAGAACCGACAATGAGATCAAGAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCAAGGCTTGTGGAGCGCATTCAAGCCGCCGCAGCTGCCGCCGCAGCTGCCACCGCTGCTACTACTGCTGGTTCGCCGGCCTTATCTGCTAGTGCCGCCGCCACCGTCACCACTACCAACAATACCACATATAGGTACAACTACGACAACAACCTTAACAACAATTTTGAGGTTCACAGTGGGAACATGATGCCAAGTCCAGCAATTATGAACAACTTTGGAGGTTCACAAATTACACAAAGTTACACTCCAGAGAATAGTAGCACGGGGACAGTTGCATCATCAGACTCGTTTGGGACTCACGTTTCACCTGTCTCGGATTTGACTCAAGATTATTACAATGTCCCAGTTGGTAACAATAACAATAACCCTAATCCTGATTATTACCAACAAGCTCATGATCAACTCAGCTTTTTGGATTGCATCACAAGCCCATCAGGGTTGTTCCTTCAGGAGCTGGATTTCCAATCCATGGAACCAAACACCCCGTGGATTCAGGGCGAGGACACATCCAACAATTTCTGGAATGTCGAGAACATGTTGCTCTTTCAGCAACTCAGTGACAGCATGTGA 1017 0.469 MEVKGRVISNSNTIIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAAAAATAATTAGSPALSASAAATVTTTNNTTYRYNYDNNLNNNFEVHSGNMMPSPAIMNNFGGSQITQSYTPENSSTGTVASSDSFGTHVSPVSDLTQDYYNVPVGNNNNNPNPDYYQQAHDQLSFLDCITSPSGLFLQELDFQSMEPNTPWIQGEDTSNNFWNVENMLLFQQLSDSM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2030 338 Gene3D - 22 78 - -
Apr1g2030 338 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 335 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr1g2030 338 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Apr1g2030 338 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Apr1g2030 338 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Apr1g2030 338 CDD SANT 27 72 IPR001005 -
Apr1g2030 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Apr1g2030 338 SMART sant 77 125 IPR001005 -
Apr1g2030 338 SMART sant 24 74 IPR001005 -
Apr1g2030 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Apr1g2030 338 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Apr1g2030 338 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Apr1g2030 338 Gene3D - 82 145 - -
Apr1g2030 338 CDD SANT 93 121 IPR001005 -
Apr1g2030 338 PANTHER MYB TRANSCRIPTION FACTOR 8 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2030 Apr-Chr1 29833472 29835874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2030 1 325 MYB Transcription Factor Family AT3G06490 52.353 1.07e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g2030 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2030 K09422 - gmx:100305347 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2030 1 29833472 29835874 Apr1g2030 1 29833472 29835874 ECH