Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2026 ATGATCGTGAGCCAGAATTTGGTGACCGAAGCGGAAATCCTTTGTCAGCAGAGCATTCCCATGTTGGACGTTAAGTACCACCTTTGCGTCGCGCACGAACACGGTGTTAAGGTTGAGGTTTCACCTACCTCCAACGGTGTTCCCATCTTTGGCCATGTGCGAGTTCCATCTGAATCGGTTTCCGCTGAAACGACTCGTTTTGAATCGGTTGTGAGTTGTTCTGAGATGATTGAAGATTCTATTTTAGAGACTCCTGCTGCCAAGTTTACACCGAATGTTCGATCTGGTTGCTGTGCTGATATTGGAGCCAGGAAATCAATGGATGATGAACACATTCAAATAGATGATCTGGCTGCCCACCTTGGATTTGTTTTTGAGCGCCCTATACCGAGTGCATTTTATGCCGTTTTTGATGGTCATGGAGGTCCTAATGCAGCTGCTTTCCTTAAGAATAATGCTATGACATTATTTTTTGAAGATGCTGATATGCTGCAATCATATGATGCTGATGCACTTTTTCTGAAGAGGTTGGAAGATTGTCATCGAAGAGCTTTTTTAGATGCAGACCTTGCCTTGGCTGTTGAACAAAGTGTTCCCGGTTATTGTGGGACAACAGCATTGACTGCCCTTATACTTGGAAGGCATTTGCTGGTTGCTAATGCAGGTGACTGTCGAGCTGTTCTTTGTAGGCGAGGAGTGGCTGTTGATATGTCCCAAGACCACAGACCAAGTTATACTCCAGAGTGCAATAGAGTGATGAAGTCAGGTGGTTTCATTGATGCCGAGGGGTATCTCAATGGGACTCTTTCCGTCTCACGTGCCCTGGGCGATTGGGAATTGAAAGTTCCACTTGGTTCTGGCTCTCCACTTATTGCTGACCCAGATGTTCAGGTGGTGACATTGACAGAGGACGATGAATTCTTGATCATTGGATGTGATGGGATTTGGGATGTAATGTCAAGTCAGAATGCAGTTAGTATCGTGCGGCGGGGATTAAGAAGGCACGATGATCCACAACAATGTGCCAAAGACCTAGTCAAGGAAGCATTACGCCTACACACTACAGATAACCTTACTGCGATTGTTATTTGCTTGTCCTCTGTTCAAAGCATTGCCGAATCATGTCCACCCCAAAGGCGAAGATTCAGAGCTTGCTCTCTTTCTGAAGAGGCCAGAAACAGATTGAAGAGCTTGCTAGAGGGGAACTGA 1209 0.4582 MIVSQNLVTEAEILCQQSIPMLDVKYHLCVAHEHGVKVEVSPTSNGVPIFGHVRVPSESVSAETTRFESVVSCSEMIEDSILETPAAKFTPNVRSGCCADIGARKSMDDEHIQIDDLAAHLGFVFERPIPSAFYAVFDGHGGPNAAAFLKNNAMTLFFEDADMLQSYDADALFLKRLEDCHRRAFLDADLALAVEQSVPGYCGTTALTALILGRHLLVANAGDCRAVLCRRGVAVDMSQDHRPSYTPECNRVMKSGGFIDAEGYLNGTLSVSRALGDWELKVPLGSGSPLIADPDVQVVTLTEDDEFLIIGCDGIWDVMSSQNAVSIVRRGLRRHDDPQQCAKDLVKEALRLHTTDNLTAIVICLSSVQSIAESCPPQRRRFRACSLSEEARNRLKSLLEGN* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2026 402 CDD PP2Cc 93 365 IPR001932 -
Apr1g2026 402 PANTHER PROTEIN PHOSPHATASE 2C 7 389 IPR015655 GO:0004722|GO:0006470
Apr1g2026 402 SMART PP2C_SIG_2 109 365 IPR001932 -
Apr1g2026 402 ProSiteProfiles PPM-type phosphatase domain profile. 94 365 IPR001932 -
Apr1g2026 402 SMART PP2C_4 84 363 IPR001932 -
Apr1g2026 402 Pfam Protein phosphatase 2C 100 357 IPR001932 -
Apr1g2026 402 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 389 - -
Apr1g2026 402 Gene3D - 80 371 IPR036457 -
Apr1g2026 402 SUPERFAMILY PP2C-like 89 367 IPR036457 -
Apr1g2026 402 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2026 Apr-Chr1 29742423 29744642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2026 1 401 PP2C-type Phosphatase Gene Family AT1G48040 56.724 1.02e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2026 K14803 - gmx:100798957 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2026 1 29742423 29744642 Apr1g2026 1 29742423 29744642 ECH
Apr9g2349 9 31083583 31086116 Apr1g2026 1 29742423 29744642 PCT