Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2021 ATGGCAACGGCGGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGACGATCCCACCCTTCCACAACCGTGGAAGGGGTTGATTGATGGAAGCACTGGTCTGTTATACTATTGGAATCCTGAAACTAATGTTACACAGTATGAAAAACCAGCTCCCTTGACCCCACCTTTGCCGTCTGGCCCTGCACCTATGGCTTCTGTGCCGAGCTTGGCGCCTATACCTGTTGCTCATTCAATGCAGTCTGGTGGGATGGTGCAACAGCATGGACAGCAGTTGGTGCAAGTGCAACCCTCACAACAGCAGATTGGTCACCATGCCCAACAGCACGGTCAATCGATGCCGCAGCAGCAACAGCAGAGTCCCCATTTGGCGCATGTTGCTCAGCAGCAGCCCTCTCAGGTTGCTCAATCTGCACAGCAGCAGAACTTGCAACTGGCGCAGCCACAGCCTGGGTTACATCAAGCCAGACAGCAGATGATGCAGCCCCAAGGACAGCAGATGATGCAGCCTCAAGGACAGCAAATGCATCCTCAGATGCTGCCGCAGGCAATCCATTCCAAGCATTTCGGGCAAGGAACACCTCAGGATCATGGCTCGCATGTTGTACAACCACAAGCACATCAATTCACTCCCCAGAACATGCAATATATGTCATATCAGCAAAATATGATTACATCTAGGCAACCACCAAACTCCCTTCAGCCAAACATGGTCTCACCTGGGCAACCTAACTCCCAGCAGATTCAACATAACATACATAGTCAGCCCTTTGAAAATCAACAAACAGTATTTCCGAAGATAGAGGAAGTGGAATTTAAAAATGGAAGCCAGGTAAGACTTTCACCATCGCAATATCAACAAAGGAGTGGCTTGCCAGTTCAAAACAACCAAAGCATTCCTGGTGAAGCCAATTCTGGTCAAGTGCCTAATATAGGTGCCAATGCTGGCCAACCGCCGCAATTCAGGGCCTTATCAGGAAGTGTGCAACAGTCTCCCTCTGCGATGCAGCCACAACAAGGTGGTCCTGATTTGTTTTACCCTCATGGTCCTAACTTTCAAAACCAGATGAGCGCAGGAATGATGCATGGTCATCCATCCAATGTACATCCTGTTGGCCAAAAGATGGGACATGAGGATAACTTACGTGGTAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGATATGTCAACAATGGGTCGTCAGCAGCCGAATATGGCTCAAATACCCATTCCGAGAAATCAGCAGGATATGAGGGTTGGCAATGCTCCTTTTCAAACTGTAATGCCTAGTGGAAATGGAAGTGGCATTGCTGGGAATGCTGTGCATAGCATGTTTGCTCCTCCAATAGGAGGACCTTCACCTCTCTCAACTAACTCTTTGATGAGGCCTCCTTATATGGGATCTTCAGATGTTACTGATCTCTCACCTGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCCCCTCCTTTCATGACATTTGACGCCACTGGGTTCCCTCCAGAGATCTTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTGGCAATTGCCAAAACTGGCTCTGGGAAAACATTAGGCTACTTAATCCCTGCCTTCATTCTTCTTAGACAACGACATAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACACGTGAACTTGCAACACAAATCCAAGACGAGGTCATCAAATTTGGACGATCTTCACGGGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATTCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATACGTAAGATTGTGAATGAGATTCCACCACACAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTGGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAAATCCTCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGCAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGCAGTGGAAAGTCACCAATTCTGGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTAAAGATATAAGGGTGGTGATCAATTATGATTTCCCCACTGGAATAGAGGACTATGTGCACCGTATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCTGGTGATCTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTCCTTCCAGAGTTAAGACAGATGGCCTTGCGTGGGCCACCAAATTTTGGGAAGGATCGGGGTGGGATTAGTCGATTTGACTCTGCTGGTGGTGTTGGTGGGCGTTGGGAGGCTGGTGGTCGTGGTGGCGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGTGGCATGAGAGATGGTGGCTTTGGTGGACGTGGTGGCGGTGGCATGAGGGACAGTGGCTTTGGTGGACGTGGTGGCGGCATGAGGGATGGTGGCTTTGGTGGACGTGGAGGCATGAGGGATGGTGGCTTTGGTGGTCGGGGTGGCATGAGGGATGGAGCTAGTGGGCAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGCAGGGGATCTGGTGGCCCTCGTGGAGGTCATATTAGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGATACAACATGGATGGGCGGGGACAAGGGCGCGGACGTGGACGAGGACGATTTGACAATAGAAGAGATGTTTCTTACAGAAATAGAGCCAGAAGTTATAGCGGTAGCCCTGAAAGAGTCAGAACATGGGATTATAGCAGAAGTCGCAGCAGAAGTAGAAGCAGAAGCAGGAGCTGGAGCAGGGGTCGCAGTCGTAGCCGCAGCTGGTCTCGTGGTCGCAGTCGCAGCTATAGCCGCAGTATTAGTCCACGTCGGAGTCATAGTCGCAGCCGTAGCCGTGGTCGGAGTTACAGCCGCAGCCCTAGCCGGAGTCACAGCCCCAGTTATGATAAGCGTGATAGGTCTGATCAACAACTTTCTGATCAGAAGGATCTACATGAAGCTGGAGCTTCTGATCCAAGCATGTTTACCATGTCTCCCGGCACGCATGGGAATCCATTTTTGGGAACTGAAAACGTGGAGCAGCAACCTGCCATTGGGAGTAATGATCCAGATAATCCAGAGGCTGTAGCAGACCTTGGTCATCAATCAGCTTCTGATATCTAA 3600 0.49 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPLTPPLPSGPAPMASVPSLAPIPVAHSMQSGGMVQQHGQQLVQVQPSQQQIGHHAQQHGQSMPQQQQQSPHLAHVAQQQPSQVAQSAQQQNLQLAQPQPGLHQARQQMMQPQGQQMMQPQGQQMHPQMLPQAIHSKHFGQGTPQDHGSHVVQPQAHQFTPQNMQYMSYQQNMITSRQPPNSLQPNMVSPGQPNSQQIQHNIHSQPFENQQTVFPKIEEVEFKNGSQVRLSPSQYQQRSGLPVQNNQSIPGEANSGQVPNIGANAGQPPQFRALSGSVQQSPSAMQPQQGGPDLFYPHGPNFQNQMSAGMMHGHPSNVHPVGQKMGHEDNLRGRAGNEYYYNSNKDMSTMGRQQPNMAQIPIPRNQQDMRVGNAPFQTVMPSGNGSGIAGNAVHSMFAPPIGGPSPLSTNSLMRPPYMGSSDVTDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPPNFGKDRGGISRFDSAGGVGGRWEAGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGGMRDSGFGGRGGGMRDGGFGGRGGMRDGGFGGRGGMRDGASGQGGRGDFFPGRGNRGRGSGGPRGGHISWGRGERGMDDRYNMDGRGQGRGRGRGRFDNRRDVSYRNRARSYSGSPERVRTWDYSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSHSRSRSRGRSYSRSPSRSHSPSYDKRDRSDQQLSDQKDLHEAGASDPSMFTMSPGTHGNPFLGTENVEQQPAIGSNDPDNPEAVADLGHQSASDI* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2021 1199 SMART helicmild6 757 841 IPR001650 -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 276 306 - -
Apr1g2021 1199 Gene3D - 712 882 IPR027417 -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 1010 1046 - -
Apr1g2021 1199 Pfam WW domain 22 52 IPR001202 GO:0005515
Apr1g2021 1199 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Apr1g2021 1199 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 338 990 - -
Apr1g2021 1199 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 502 530 IPR014014 GO:0003724
Apr1g2021 1199 CDD WW 23 54 IPR001202 GO:0005515
Apr1g2021 1199 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 653 661 IPR000629 -
Apr1g2021 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 707 IPR014001 -
Apr1g2021 1199 Pfam DEAD/DEAH box helicase 526 696 IPR011545 GO:0003676|GO:0005524
Apr1g2021 1199 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g2021 1199 CDD SF2_C_DEAD 721 850 - -
Apr1g2021 1199 Pfam Helicase conserved C-terminal domain 733 841 IPR001650 -
Apr1g2021 1199 SMART ultradead3 521 724 IPR014001 -
Apr1g2021 1199 Gene3D - 478 711 IPR027417 -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 1070 1116 - -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 278 306 - -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 898 1199 - -
Apr1g2021 1199 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Apr1g2021 1199 MobiDBLite consensus disorder prediction 82 144 - -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 1123 1146 - -
Apr1g2021 1199 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Apr1g2021 1199 SMART ww_5 21 54 IPR001202 GO:0005515
Apr1g2021 1199 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 338 990 - -
Apr1g2021 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 856 IPR027417 -
Apr1g2021 1199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 880 IPR001650 -
Apr1g2021 1199 MobiDBLite consensus disorder prediction 1153 1180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2021 Apr-Chr1 29693334 29703273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2021 490 879 Eukaryotic Initiation Factors Gene Family AT3G19760 34.015 6.12e-66 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2021 1 29693334 29703273 Apr1g2021 1 29693334 29703273 ECH