Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2020 ATGGAAGCTGAGGCTACCACCACTCCACAGTTGGCGCTCGCTGACACAGATATCAACTGGGACAGGTTGGATAAAACCAAGTTTCACATCATTGGTGCGGTTCTCTTCACTGCTCAATCAGCGTTGCTTCATCCAACAGCGGTGGTGAAGACACGGATGCAAGTGGCAGGCTCACACGTGCCGGGAATCTCAGTGTTCACTCACATTCTACGTAGCGATGGCATTCATGGAATCTTCAGAGGTTTCGCCACTTCTGCTATTGGTTCAATGCCTGGGAGGGTTATCGCTCTCACCTCTCTCGAGATGTCAAAGGACATCATGTTAAAACACACCCAAGGTTGTCACATTCCAGAAGCTTCTCGTGTTGCCCTCGCTAATGGAGTGGCTGGCATGTTCTCCAATTTGCTCTCTTGTGTTTACTTTGTGCCTTTGGATGTGGTTTGTCAGAGGTTAATGGTTCAAGGTCTTCCTGGGACTACATATTGTAGAGGTCCATTTGATGTTGTCCGTAAGGTTGTGAAGACTGAGGGTTTTCGTGGTTTGTATAGGGGTTTTGGATTAACGGCTGTGACTCAGTCCCCTGCATCTGCACTTTGGTGGGGTTCATATGCTGCAGCCCAACACATAATTTGGAGGAGTTTGGGCTACAAAGATGATATGGAGAACAAACCTTCACATGTGGAAATGGTGACAGTTCAGGCTACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACGCCCATAGATACAGTAAAAACACGTCTTCAGGTTATGGACAACTATGGTTCTGGAAGACCATCAGTAATGAAGACAGCAAAGACTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACCGGGGATTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACGATGATTGTTACTTATGAACTGATAAGGGAAATTCTTGATCTAAGTAAGCTTTTAGCTTTAGTTCATAACTGTATGTTGAGAACGTTTATTGAATTTGAATTGTGTCAAAAACCTTAG 1029 0.45 MEAEATTTPQLALADTDINWDRLDKTKFHIIGAVLFTAQSALLHPTAVVKTRMQVAGSHVPGISVFTHILRSDGIHGIFRGFATSAIGSMPGRVIALTSLEMSKDIMLKHTQGCHIPEASRVALANGVAGMFSNLLSCVYFVPLDVVCQRLMVQGLPGTTYCRGPFDVVRKVVKTEGFRGLYRGFGLTAVTQSPASALWWGSYAAAQHIIWRSLGYKDDMENKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVMKTAKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIREILDLSKLLALVHNCMLRTFIEFELCQKP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2020 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 121 209 IPR018108 -
Apr1g2020 342 SUPERFAMILY Mitochondrial carrier 21 311 IPR023395 -
Apr1g2020 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 106 IPR018108 -
Apr1g2020 342 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Apr1g2020 342 Pfam Mitochondrial carrier protein 232 316 IPR018108 -
Apr1g2020 342 Pfam Mitochondrial carrier protein 30 110 IPR018108 -
Apr1g2020 342 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 2 315 - -
Apr1g2020 342 Gene3D Mitochondrial carrier domain 30 320 IPR023395 -
Apr1g2020 342 PANTHER OS01G0329400 PROTEIN 2 315 - -
Apr1g2020 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 315 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2020 Apr-Chr1 29688602 29690702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2020 15 315 Chloroplast and Mitochondria Gene Families AT5G15640 49.673 3.68e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2020 K15121 - gmx:112997745 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2020 1 29688602 29690702 Apr1g2020 1 29688602 29690702 ECH