Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2012 ATGTGCAGCAGCATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTATTGGTAGTAGCAGCACTTCATCATCTGAATTAGCTACTACATCTCATCACCACCACCATCATCATCATAATCATAATCATAATGATCACTGGCACCAACACTTCTCTTCTGATCCCATGAATTTCTCTTCTGTTCTTGAAGACCCCAAAGGAAGCACCAACTTTGGTGATCCATTCTCAACCATGAGAGATCCCTTTCTTCAGGAGCTTGACATGCCTTCAGCTTCTGCATACTTCACTGCTTCTGGGGGTTTAGAAGATGCAGCTGCTAGTTTTGGTGGTGTTAGTGGTGGTAATACTAGTAGTACTAATACTAATACTAGTGCTACTTCTGTTGTTGCTGCACACAAGATTCTTGAAGAACATGACATGAGAAGGCCTTGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAGTGCAAAGTTACCCGTCTCACCCTATGATTCCACAGCCATGGCACCTTCTCCAAGGGCAATTAAGCCTTCTGCTGTGGTTTCACCCAACATGGTTAATGCAAACACCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTAGTTTGTATTCCTGCACCTGCAGCTGCAAACAGCAGACAAACTGGAGAGGTAGTTCCGTCAGATTTGTGGGCTTGGAGAAAATACGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTATAGATGCAGCAGCTCAAAGGGTTGTTCTGCAAGGAAGCAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACTTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTAGCTGGTTCAACAAGGTCCCAGCCATCAAAGAACAACAATGCTACAAATTCAAAGAATTCAGAATCCTCTTTTAATCCCCAAAAGGGTACAACAACAAAGCCAAAGGAAGAGCAACAGCAAGAGAGCAACAATAATGAGGGAAATGTGTCCCCAGTTGTTGCTGGGAACTCAGGAAACAGTGCATCTGTGAAGGAAGAGAACATGGAAGACATAGAGAAGCAATTTGAGATGGATGAGGGAGAATTCAGTGATGGACTCCCTTATAAGCCTTGTATGATGGATCAAAGCAATAACCAATCCGAGGACTTTTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCACTAAACCTTTTGTTCACTCAAGGGTTTGGTGCAGCAGAAGATCAAAGGGAATCCAAGGCCTTAGATCCATTCCATCTATTTGACTGGTCAGGAGACACCAACACCAACACCAATACCAACTCATTTGAAGAACCAAATAAGAGAAGGTTATGA 1452 0.4373 MCSSIIMDNYQGDLTDIVRASGGAYGIGSSSTSSSELATTSHHHHHHHHNHNHNDHWHQHFSSDPMNFSSVLEDPKGSTNFGDPFSTMRDPFLQELDMPSASAYFTASGGLEDAAASFGGVSGGNTSSTNTNTSATSVVAAHKILEEHDMRRPCKNIFSNMIQISPSAKLPVSPYDSTAMAPSPRAIKPSAVVSPNMVNANTSKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNNATNSKNSESSFNPQKGTTTKPKEEQQQESNNNEGNVSPVVAGNSGNSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCMMDQSNNQSEDFFAELGEIEADPLNLLFTQGFGAAEDQRESKALDPFHLFDWSGDTNTNTNTNSFEEPNKRRL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2012 483 MobiDBLite consensus disorder prediction 41 55 - -
Apr1g2012 483 Gene3D WRKY domain 226 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2012 483 MobiDBLite consensus disorder prediction 296 383 - -
Apr1g2012 483 SMART WRKY_cls 252 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2012 483 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 465 IPR044810 GO:0003700
Apr1g2012 483 MobiDBLite consensus disorder prediction 462 476 - -
Apr1g2012 483 Pfam WRKY DNA -binding domain 254 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2012 483 ProSiteProfiles WRKY domain profile. 247 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2012 483 MobiDBLite consensus disorder prediction 460 483 - -
Apr1g2012 483 MobiDBLite consensus disorder prediction 277 386 - -
Apr1g2012 483 MobiDBLite consensus disorder prediction 28 60 - -
Apr1g2012 483 SUPERFAMILY WRKY DNA-binding domain 250 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2012 483 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 11 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2012 Apr-Chr1 29606127 29609573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2012 1 469 WRKY Transcription Factor Family AT1G30650 42.355 9.79e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g2012 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2012 - - aprc:113852911 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2012 1 29606127 29609573 Apr1g2012 1 29606127 29609573 ECH