Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2005 ATGCAAACGATACTGAGGGCCTCAAATCACCAATTTCTCACCCTTCCAATCCCAACCAATTCATTTTCCTCCAATTTCAATCAAGCTGAGAGAGAGTCTGTGCTACTTGTGATGGGTGCTCCTAAGCAGAAATGGACTGCAGAGGAGGAAGCAGCGCTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGTACAATACTTAAGGATCCAGAGTTCAGTGGAGTCTTATATCTGCGATCTAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCCAGGGAAAAATCTAGGTTAGCAGTCAGAAGGGTGCATCAGGCCCCAAAACAGGAGGACAACCCAATGGCTATTGCTCCTGTTGCTCCAAGTGATGAAGAAATTGCTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATGGTGCATATTCCTGGTCCAAAGAGGTCTATAGTAAGATTAGATAACCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCACCGGACTTCAAAAGGTTGTTGTCTGCAAAGTTGAAGTTTTTGACAGCTAGTGGAAAACTGATCAAGGTAAAGCGCAGGTATAGGATTGCACCTACTTCAGCGTATTCTGACAGAAGAAGAAACTCATCCATGTTACTAATGGATGGAAGGCAGAAAGCCTCTATGAAAGCTGACAAAGATGACATCAACATCCTTACCAAGTCTCAGGTAGATTTAGAATTAGCAAAGATAAGGTCCATGACTGCACAAGAGGTAGCCGCATTTGCTGCTCAAGCAGTATTGGAAGCAGAAGCTGCCTTAGCAGAAGCAGAGGAGGCAGCAAAGGAGGCAGATGTAGCCGAAGCTGATGCAGAGGCAGCCCAAGCTTTTGCAGAAGCTGCAATAAAATCAGGGAAAGGGAGAAACACAAGATGA 996 0.4418 MQTILRASNHQFLTLPIPTNSFSSNFNQAERESVLLVMGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHQAPKQEDNPMAIAPVAPSDEEIADVKPLQVSRDMVHIPGPKRSIVRLDNLIMEAITSLKENGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKFLTASGKLIKVKRRYRIAPTSAYSDRRRNSSMLLMDGRQKASMKADKDDINILTKSQVDLELAKIRSMTAQEVAAFAAQAVLEAEAALAEAEEAAKEADVAEADAEAAQAFAEAAIKSGKGRNTR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2005 331 Gene3D - 39 96 - -
Apr1g2005 331 Gene3D - 155 234 IPR036388 -
Apr1g2005 331 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Apr1g2005 331 Coils Coil 280 314 - -
Apr1g2005 331 SMART h15plus2 155 220 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr1g2005 331 SUPERFAMILY Homeodomain-like 39 108 IPR009057 -
Apr1g2005 331 Pfam Myb-like DNA-binding domain 42 93 IPR001005 -
Apr1g2005 331 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 38 330 - -
Apr1g2005 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 70 IPR017930 -
Apr1g2005 331 CDD SANT_TRF 43 93 - -
Apr1g2005 331 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 157 225 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr1g2005 331 SMART sant 41 96 IPR001005 -
Apr1g2005 331 Pfam linker histone H1 and H5 family 162 218 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr1g2005 331 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Apr1g2005 331 PANTHER SINGLE MYB HISTONE 4 38 330 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2005 Apr-Chr1 29536317 29542067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2005 38 277 Single Myb Histone (SMH) Gene Family AT1G49950 62.857 4.78e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr1g2005 Linker_histone 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2005 K09422 - gmx:100780698 421.009