Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2001 ATGCATTCAGTTCCAAATTCTAGAGTAACCCGTGTTCTGAGCTTGAGTTTTGAGAGAAAAATGGAGAATAATTTGAATGGCAGTCACAGTCACAGCAACGGTGAAAGAGGCATCAGTAGATACCCAGTTGGACGTCGTCCTCGAAACCCCATTGATGAAATAGCGATGAGACGTGAATTAAGCAATTCACAGCAGGAACGAGACGACGTGATTGAGGAAGAAGGAGAAGGAGTGACTGTAAGTGAAGAGGATTCCATAGACAATGAAGAAGATATGGACTACGATGATGAGCCCAATGCTCCTTTACCAGGTGTTAATAGAGCGGTTGTGGCTGCTATCCCTGCTGTTCAAACTGCACCTACACTAAACGACATTCATACTAATGGCGTTTATATGGAGCTTTCTGATCCTGACGTGCTTGACTGTTACATATGCTATGAACCTTTGTATATTCCAGTCTACCAGTGCATCAATGGACATGTTGTGTGCGTTTCTTGCTTTTGCAAAATTCAGCACAAGTGTCCCTTTTGCTCAATGTACATTGGCAACAACCGGTGCCGAGCAATGGAGAATGTTCTAGAAGCAGTGAAAATTACGTGCCCAAATGCAAAATATGGTTGCAACCAGATGATAAGGTACAGTGAGAAACGTGAACATGAGAAAACATGCGACTTTGTCCCATGTTCATGTCTGCAGCCATTTTGTGACTTTGTGGGCAGTTCCAAGGTTTTAGCAAAGCACTTGGGCGATGACCATTTTTTCAATCGAACAAAATTCAACTATGGTGAATTTTTCAATGTCTCCATAAGTGTTCATAGGAAATTCTCTGTGCTTCAATCGCGAAGTGATGACAAACTCTTTGCTATTTGCAATAAGGCTGATGTTAGGGAGCATGAAATTTTTGTTTGTTTCATTGGTCCTATTTTTATGGTCCCTCAATTTAGTTATGAAATTAAGGTTGTGTCTGATAATGATGGAGAGAGCTATGAATTGCCTCAAACTTCTGTGGAGAAAAATATTCAAGGTGGCAGAACTGGATTTCCTTCAGTAACCATGTTCCTTAATGTTCCATTAGAGGTATTTCGTCCTCGTTATTATAGCAGAATGGAGGTTGAACTGCAACTTCGAATTACAAGGGTAATTGGTGCTGCTACAAATTCTGAAGCTGGTCCCTCCGGGCTTAATTAG 1188 0.4125 MHSVPNSRVTRVLSLSFERKMENNLNGSHSHSNGERGISRYPVGRRPRNPIDEIAMRRELSNSQQERDDVIEEEGEGVTVSEEDSIDNEEDMDYDDEPNAPLPGVNRAVVAAIPAVQTAPTLNDIHTNGVYMELSDPDVLDCYICYEPLYIPVYQCINGHVVCVSCFCKIQHKCPFCSMYIGNNRCRAMENVLEAVKITCPNAKYGCNQMIRYSEKREHEKTCDFVPCSCLQPFCDFVGSSKVLAKHLGDDHFFNRTKFNYGEFFNVSISVHRKFSVLQSRSDDKLFAICNKADVREHEIFVCFIGPIFMVPQFSYEIKVVSDNDGESYELPQTSVEKNIQGGRTGFPSVTMFLNVPLEVFRPRYYSRMEVELQLRITRVIGAATNSEAGPSGLN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2001 395 ProSiteProfiles Zinc finger SIAH-type profile. 195 253 IPR013010 GO:0008270
Apr1g2001 395 ProSiteProfiles Zinc finger RING-type profile. 142 178 IPR001841 -
Apr1g2001 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 65 380 - -
Apr1g2001 395 SUPERFAMILY TRAF domain-like 195 339 - -
Apr1g2001 395 MobiDBLite consensus disorder prediction 23 101 - -
Apr1g2001 395 MobiDBLite consensus disorder prediction 46 68 - -
Apr1g2001 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 65 380 IPR044286 -
Apr1g2001 395 MobiDBLite consensus disorder prediction 69 97 - -
Apr1g2001 395 Pfam Seven in absentia protein family 185 339 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr1g2001 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Apr1g2001 395 SUPERFAMILY RING/U-box 137 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2001 Apr-Chr1 29513051 29515558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2001 104 381 C3H Transcription Factor Family AT2G41980 26.910 6.76e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2001 K04506 - gmx:102662420 226.868