Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2000 ATGCATCACAAAAGAAAAGCGACGCAATATTACTATTCGCGACCATCCACCAGGATTCTTATACGTAACGTAGATGACGTAGTACGTAAAGGAAAGACTCTACGTGAAGACGGAGAAGGCATGGAAGAAGAAGGAGAAGGAGAAGATTCTCAGATCGAGTCGGAAGACTATTATGATGAGGACGGCATGGAGAGTTCAAAACATGATGATTATTATTATGATTATGATGCTTTTTCCCGTAGGTTTAATTCTGTCATAATTTCCGACCCTAATGTCTTTAATTGCTGCGTTTGCTCGCAAATCTTGACTGTTCCTGTCTACGAGTGCGCTAATGGGCATGCTGCTTGCTCTACCTGCGCTGCTGATCATTTAAAGCAATGCCGCTTGTGCTTATTGCCTATTGGTTACAAACGTTGCATAACTATTGAGAGAGTATTGGAATCTATTCACATACCATGCCTGAATGTGAAATACGGTTGCAAAGAGACATTGAGTTTAACTGAGAGTAATAACCATGACCAAAAATGCATCTATGTTCCATGTTTATGCCCATATTCAGATTGCCACTTCACTGCCCCATCCAAGGACTTGTTCCTTCACTTCATAAACAAACATAGGGATTCCATAATCACATTTTCATATGATGATTATTTCTCTGTCTCATTGAGGCGCAATGATGAAACCGTGGTTCTTCGAGAGGAATATGATAACAAACTGTTTGTTCTCAACAACTATGTTGAGAGTTTGGGAAGTGTTGTTTCTATTAGTTGCTTTGGTAACTCTTTTCAGCCAGGTTATGATTATTCTGTGGGTGCTACTTACAAGGGACGCAGCCTAATATTGCATTCTATTACCAACAATATTCAATCCAACACAGTTAATGCTCCTTCATCAGGGTTCTTTGTGGTTCCTTTTAATTATTTTGATTCTTCTGGATCTCTCAAACTAGAAATTCGCATCAGGGATAAATAA 972 0.392 MHHKRKATQYYYSRPSTRILIRNVDDVVRKGKTLREDGEGMEEEGEGEDSQIESEDYYDEDGMESSKHDDYYYDYDAFSRRFNSVIISDPNVFNCCVCSQILTVPVYECANGHAACSTCAADHLKQCRLCLLPIGYKRCITIERVLESIHIPCLNVKYGCKETLSLTESNNHDQKCIYVPCLCPYSDCHFTAPSKDLFLHFINKHRDSIITFSYDDYFSVSLRRNDETVVLREEYDNKLFVLNNYVESLGSVVSISCFGNSFQPGYDYSVGATYKGRSLILHSITNNIQSNTVNAPSSGFFVVPFNYFDSSGSLKLEIRIRDK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2000 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 39 321 - -
Apr1g2000 323 Pfam Seven in absentia protein family 138 247 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr1g2000 323 ProSiteProfiles Zinc finger SIAH-type profile. 148 206 IPR013010 GO:0008270
Apr1g2000 323 MobiDBLite consensus disorder prediction 33 53 - -
Apr1g2000 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 201 IPR013083 -
Apr1g2000 323 SUPERFAMILY TRAF domain-like 148 321 - -
Apr1g2000 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 39 321 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2000 Apr-Chr1 29508287 29509789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2000 92 206 C3H Transcription Factor Family AT2G41980 30.769 4.70e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2000 K04506 - gmx:100797881 241.891