Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1990 ATGGTTCTGAAATTTGCATTTCACATAATCACGATGATGACATTATGGCCCATACATCTACAGGCATCTGCGCAGGATTCAAAGATAACAAAAGATGGGTGTGACCCCACATGTGGAGGTGTTGAAATCCCTTTTCCGTTTGGAATGAAGGATCCCTCCTGCTACGCAGACACGGGGTTTGAAATAGAATGCAGAAATACCAGTTCAAGAAATGAAACACCTTACCTCAAGTCCATAGATCTGGAGGTGACAGCCATTGATGTCTCTAAGAACCAGGTTACGATAAAGAATCCAATTTACCGTAGGAATTGCGGAATAAAAGATGTTTCGCCAGTCAAAAACCTGGGAGGAAGCCCTTTCGTGTATTCCCAGGATTACAACAAATTTATGGCCGTAGGTTGCAATAGCAGTGCTATTTTGCATTCAGATGGGTCAGAAGCCAGTGGTTGTGTGACAATCTGTGACAACAACAAAGACGATGTCTATGACATCGACCTTATAACCACTGAATGCCACGGCATGTACTGTTGCAAGAGTACCCTGCCCTCTCATCTCTCACAATTTAACGCAACAATTGAAGGTTTGGGTGGAAATAATGAGTGCGGTTACGCCTTTATTTATAGCGGTGACAATATTGAGAGGGGGCTGAAGCATTTAAACGAAGTTTCTGCGGTTCTTGAGTGGGAGATTCTGTACACTTCTCCCTTCATAATCGCTCCATATGTACGCTTTAACGCTGACTGTATTTACACAAATATAACCTCTGCGGAGAACACATACTCAGGTATGAGATGCAGTTGCAAATATGGCTTTCATGGCAATCCCTACCTTGATGGAGGCTGTAAAGGACTTTTTTCAAGTCTCGGATTCATTGTTTTACTCCTTGGTCTGTGGTGGCTATATAAAGTTGTGAAGAGAAAAATATTAAAGAAACAGAAAGAAAAGTTCTTCGAACAGAATGGAGGATTATTGTTACAACAAATATTATCTTCCGGTGAAGTTAATGCTGACAAAGTTAAACTTTTCAGCTTAAAGGACTTAGAGAAGGCCACTGACCAGTTTAGCATGAATAGAGTACTTGGCAAAGGAGGCCAAGGTACTGTTTACAAGGGCATGCTAATAGATGGAAAAATTGTTGCAGTGAAGAAGTTCAAGGTCCAAGGAAAAGTTGAACAATTCATCAACGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAAACTGAAATTCCTCTGCTTGTTTATGAATTCATTCCAAATGGTAACCTTTTTGAATACTTACATGATCAACAAAATGAGCCAATAACATGGGATACCCGTTTAAAAATTGCCATTGAAGTTGCCGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCATAGAGACATAAAATCAACAAATATACTATTGGATGAAAGGTACAAAGCAAAAGTTGCTGACTTTGGTACATCAAGAATGGTTTCCATTGAAGCTACCCACCTCACTACAGCAGTTCAAGGTACTTTTGGGTATCTAGATCCTGAATATTTTCATACTAGTCAATTTACAGATAAAAGTGATGTTTATAGCTTTGGAGTAGTTCTTGTTGAACTTTTAACAAGACAAAAACCAATATCCTCCTTGGGATCTGAGGAAGCAAGAAGTTTGGCTTCATATTTCACTCTTTGTGTAGAGGAAAATCGTTTGTTTGATATTATTGATGAACGAGTTAGGAAGGAAGGGGAAAAAGAACATATCAATATAGTTGCCAATCTTGCTAGTAGATGCTTAGAGTTGAATGGGAGAAAACGACCAACAATGAAAGAAGTCATACTGGAAATAGAAGGTATTCGAAATTTAGAAAAGATGTCTAGTGCACAAGAAAATCATGAAGAATACGAGTTTGGTGAAATTGAAAACTCCCAATCACGGATTGCATCTTCTCCTACCTCAAATACAGGATCAACTCTAGAATGCCAAACATCAACCTCAGAGGTTATGCCTATTCTTATCGAATGA 2040 0.3882 MVLKFAFHIITMMTLWPIHLQASAQDSKITKDGCDPTCGGVEIPFPFGMKDPSCYADTGFEIECRNTSSRNETPYLKSIDLEVTAIDVSKNQVTIKNPIYRRNCGIKDVSPVKNLGGSPFVYSQDYNKFMAVGCNSSAILHSDGSEASGCVTICDNNKDDVYDIDLITTECHGMYCCKSTLPSHLSQFNATIEGLGGNNECGYAFIYSGDNIERGLKHLNEVSAVLEWEILYTSPFIIAPYVRFNADCIYTNITSAENTYSGMRCSCKYGFHGNPYLDGGCKGLFSSLGFIVLLLGLWWLYKVVKRKILKKQKEKFFEQNGGLLLQQILSSGEVNADKVKLFSLKDLEKATDQFSMNRVLGKGGQGTVYKGMLIDGKIVAVKKFKVQGKVEQFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQQNEPITWDTRLKIAIEVAGALFYLHSAASQPIYHRDIKSTNILLDERYKAKVADFGTSRMVSIEATHLTTAVQGTFGYLDPEYFHTSQFTDKSDVYSFGVVLVELLTRQKPISSLGSEEARSLASYFTLCVEENRLFDIIDERVRKEGEKEHINIVANLASRCLELNGRKRPTMKEVILEIEGIRNLEKMSSAQENHEEYEFGEIENSQSRIASSPTSNTGSTLECQTSTSEVMPILIE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1990 679 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 677 IPR045274 GO:0007166
Apr1g1990 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Apr1g1990 679 SMART serkin_6 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1990 679 ProSiteProfiles Protein kinase domain profile. 354 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1990 679 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 16 677 - -
Apr1g1990 679 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Apr1g1990 679 Pfam Protein tyrosine and serine/threonine kinase 355 619 IPR001245 GO:0004672|GO:0006468
Apr1g1990 679 MobiDBLite consensus disorder prediction 647 670 - -
Apr1g1990 679 MobiDBLite consensus disorder prediction 635 670 - -
Apr1g1990 679 Gene3D Transferase(Phosphotransferase) domain 1 428 650 - -
Apr1g1990 679 Gene3D Phosphorylase Kinase; domain 1 326 427 - -
Apr1g1990 679 CDD STKc_IRAK 360 624 - -
Apr1g1990 679 SUPERFAMILY Protein kinase-like (PK-like) 338 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1990 Apr-Chr1 29421280 29425393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1990 6 647 Receptor kinase-like Gene Family AT1G69730 43.009 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Apr1g1990 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1990 - - aprc:113852217 1350.88