Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1989 ATGCTTCTGAAATATGTATTTTGTATCATAATTTTGATGATAGGACCCATACACCCACTTGCATCAGCACAATATTCGAACACGACAGAACCTGATTGTGATTCGAGATGTGGAACGGTAACAATTCCTTATCCATTTGGTATAAAAGATCCCAAATGCTACGCAGACAAGTGGTTTGAAATAGAATGCAGAAGCACTTCTACGGGTCAAACACCGTACCTGAAATCACCAAACGTTGAAGTCACATCCATTGATCCAATGAATAGCAAGGTTTGGATCATGAATCCAGTTTTCCATTGGAATTGCCAAAACACCAAAGATTCAGAACCAGTCATAGACCTTAAAGGAACCCCTTTCGTGTATTCCAAGGATGATAACAAATTCACAGCCATTGGTTGCAATAAGATAGCGTTTTTGCAATCGAATGGGTCAGAAGTTAGCGGTTGTGTGTCCCTTTGTGACAGGTACGACGATGAAGAAGTTAACAATAACGTTGCTTTTGGAGTCGATGGTTGTGTTGGGAGGTTTTGCTGTGAGACTTCATTACCATCCTTTCTTTCAGAGTTTAACGTAACGCTTGAGAATGTAAGAGAGAAAAATGTGAGTGATGGGTGTAGCCATGCCCTGATTGGAACAGAGTATTGGTACAGAGTACCCTTTGGGTCAAGTTACGAGGATCGAAGTTTTCGTGACTTGGGTGTGAATTATGTTCCTGCGGTGCTTGATTGGGTGGTTCTGAACTCGTCTCTGAAACGCCCTACTGAAGGTGCCAACTGCACTAACGTTGCTTCTTCACAAAACAGACCTGAAGGTTGGAGATGCGAGTGTTACACAGGGTTTTATGGCAATCCCTACATTACTGGAAGCTGTATAGCTATTGATGGTTCCTCTGATAGTAAAACTCGAGCGAAATGGGCTATAGTAGGAGTTTCGTCGAGTCTTGGATCCTTCATTATACTCCTTGGTATTTGGTGGTTGTACAAAGTTTTAAGAAAAAGAATGATACAGAAACGCAAGGAAAAATTCTTCAAACAAAACGGTGGTTTGTTGTTACAACAAAGAATGTCTTCTACTGAAGTTAGAGTCGAAAAAGTTAAACTGTTCAGCTTAAATGACTTAGAAAAAGCCACTGACCACTTCAATACAAACAGAATAATAGGAAAAGGAGGTCAAGGTACCGTTTACAAGGGAATGTTAGTAGATGGACAAATTATTGCAGTGAAAAAATTCAAAGTGGAAGGAAAGGTTGAAGAGTTTGTGAATGAGTTTGTCATTCTTTCACAAATTAACCATCGAAATGTGGTTAAGTTGTTAGGTTGTTGTTTGGAGGCAGAGATTCCCTTGCTTGTGTATGAATTCATTCCCAATGGTAACCTTTCTAAATATTTGCATGACCAAAGTGAAGACTTAGCACTTACATGGGATATGCGCTTGAGAATTGCCACTGAAATTGCTGGAGCTTTATTTTACTTACACTCAGTTGCATCTCAACCCATTTATCATAGGGACATAAAATCAACAAATATACTATTAGATGAAAAGTATAGAGCAAAAGTGGCAGACTTTGGAACCTCTAGAATAATTTCCACTGAGGCTACACACCTCACCACAGTAGTTCAAGGTACTTTTGGGTACTTAGATCCTGAATATTTTCATACTAGTCAATTCACAGAGAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTCGTTGAACTTTTGACCGGAGAAAGGGCAATATCCTCGGTGAGATCACATGAGGCCAAGAGTTTGGTTTCATATTTCAATATTTCTATGGAGAAAAATTGTCTGTTTGACATTATTGACAAAAAAGTCATGAAGGAAGGGAAGAAAGAACATATCATTGCTGTTGCTAATCTTGCAAATAGATGCTTGGAATTGAATGGGAAAAAACGACCAACTATGAAAGAAGTGACATTTGAATTAGAAGGAATTCGGAAATTGGATAAGAAATCTAGTGTAGAGCAAAACCACGAAGAAATTGAGCTTGCTGGAGTTGAAGACTACCAAAATTGGACTGGATATTCTACATCAAATTCATTTCCAACACTAGGCAGTGTTTCAGACTCGGAGGTTATACCTATTGTTACATTAAAATGA 2118 0.3872 MLLKYVFCIIILMIGPIHPLASAQYSNTTEPDCDSRCGTVTIPYPFGIKDPKCYADKWFEIECRSTSTGQTPYLKSPNVEVTSIDPMNSKVWIMNPVFHWNCQNTKDSEPVIDLKGTPFVYSKDDNKFTAIGCNKIAFLQSNGSEVSGCVSLCDRYDDEEVNNNVAFGVDGCVGRFCCETSLPSFLSEFNVTLENVREKNVSDGCSHALIGTEYWYRVPFGSSYEDRSFRDLGVNYVPAVLDWVVLNSSLKRPTEGANCTNVASSQNRPEGWRCECYTGFYGNPYITGSCIAIDGSSDSKTRAKWAIVGVSSSLGSFIILLGIWWLYKVLRKRMIQKRKEKFFKQNGGLLLQQRMSSTEVRVEKVKLFSLNDLEKATDHFNTNRIIGKGGQGTVYKGMLVDGQIIAVKKFKVEGKVEEFVNEFVILSQINHRNVVKLLGCCLEAEIPLLVYEFIPNGNLSKYLHDQSEDLALTWDMRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKVADFGTSRIISTEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGERAISSVRSHEAKSLVSYFNISMEKNCLFDIIDKKVMKEGKKEHIIAVANLANRCLELNGKKRPTMKEVTFELEGIRKLDKKSSVEQNHEEIELAGVEDYQNWTGYSTSNSFPTLGSVSDSEVIPIVTLK* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1989 705 Gene3D Phosphorylase Kinase; domain 1 351 453 - -
Apr1g1989 705 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 15 699 - -
Apr1g1989 705 CDD STKc_IRAK 386 651 - -
Apr1g1989 705 Pfam Protein kinase domain 381 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1989 705 Pfam Wall-associated receptor kinase galacturonan-binding 33 94 IPR025287 GO:0030247
Apr1g1989 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Apr1g1989 705 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 699 IPR045274 GO:0007166
Apr1g1989 705 SUPERFAMILY Protein kinase-like (PK-like) 357 648 IPR011009 -
Apr1g1989 705 Gene3D Transferase(Phosphotransferase) domain 1 454 677 - -
Apr1g1989 705 SMART serkin_6 380 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1989 705 ProSiteProfiles Protein kinase domain profile. 380 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1989 Apr-Chr1 29415204 29418469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1989 9 685 Receptor kinase-like Gene Family AT1G16260 43.847 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Apr1g1989 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1989 - - gmx:100798794 899.812