Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1988 ATGATTCTGCAATTTGCATTTCATGTCATAATTTGGACAACATGGACAGTATATGCACTTGCATCAGCGGAAACTCCGATCATAGCACAACCAGGTTGTAATTCAACATGTGGGGATATTGAGATCCCTTTCCCTTTCGGAATGAAAGATCCCAAATGCTATTTAGATAAATGGTTTGAAATAGAATGCAGATTCAGCTCTCGAGGTCTGAAACCTTACTTGAAGTCCTTCAATCTTGAAGTGGAATCCATTAATGAGGACGTAGCCGAAGTTGACATCATGAACCCAATTTACCATCGGAACTGCCAAAACAACAAAGCAAAGCCAACAGTGATAAACCTGAGAGAAAGCCCTTTCGTGTATTCCCAGGATAGGAACAAATTCTTGGCGGTTGGTTGCAACAACCTCGCTTTTCTGCAGTCGAATGGGACAGCTGTCGGTGGTTGTGTGTCAGTTTGCGACGACAACGAAGAAGTTGACGACAACTTCAACTTCGCAAGAGATGGATGTCACGGAAGGTACTGTTGCGAGACTTCTCTGCCTCATTATCTTGTGGAATATAACGCAACGCTACAAGATTTGAAGAACGAGAGTGTGAATGGTAAGTGTAGTTACGCGTTCATTGTAAGTAATGATTGGATTCAGGTTCAGAGCTATTATTATTATTGGTCTGATTTGATGGCTGAGAGATTTAACGAGCTCCAGAGTGTGGATTATGTTCGTGCTACGCTTGAGTGGGAGATTTTGAACGAGACGCTCGCGAATTCAACCCTGCAAATCCCTTCAGATGCAAGGTGTCATGAATCTAATGTTACGTCTTCCACGAACACGACCACAGGTTTGAGATGTCTCTGCCCCGTAGGCTCCTATGGCAATCCATACATTAACGGAGGCTGCATCGCCATGCCCGGGTACTTTGACAAGAGCAGTCGAGGGAAGAGGTGGGCAATAGTAGGTGTTTCCTCAAGTTTTGGTTCTATCATTGTCCTCCTTTGTCTATGGTTATTGTATAAAGCCGTAAGGAAGAGAGCGATACAGAAACGCAAACAAAAATTCTTCAAAAAGAATGGTGGTTTGTTGTTACAACAAAGAATGTCATCTGGTGAAGTTAATGTTGACAAAACAATCCTCTTCAGCTTAAAGGATTTAGAAAAAGCCACTGATCACTTTAATATCAATAGAATTCTTGGAAAGGGAGGCCAAGGTACTGTCTACAAAGGCATGTTAGTAGATGGTAGAATTGTAGCAGTGAAAAAGTTTAAGGTAGAAGGAAAGGTTGAAGAATTCATCAATGAGTTTGTCATTCTTTCACAAATTAACAACAGAAACGTTGTTAAGTTGTTGGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTTTATGAATTCATTCCTAATGGTAACCTTTTCCAATATTTGCATGAACAAAATGAAGACTTACCAATGACATGGGACATGCGTTTGAGAATTGCCACTGAAATTGCTGGAGCTCTATTTTACTTACACTCAGTTGCATCTCAACCCATTTACCATAGAGACATCAAATCCACAAATATACTATTGGATGACAAGTACAAGGCAAAAATAGCAGATTTTGGAGCATCAAGAATAATTTCCATTGAAGCTACCCACCTTACAACTGTAGTTCAAGGTACATTTGGATACTTGGATCCTGAATATTTTCACACTAGTAAATTTACAGAAAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGCGGAACTTTTAACTGGGAAGAAGCCAATATCCTCATTTAGAGGGGAATCTAAGGGTTTAGCTTCATATTTTGTTCAGTGTATGGAGGAGAATAATCTATTTGACATTATTGACAAAAGAGTGATGAAGGAAGCAGAGAAGGAGCATATCATTGCTGTTGCTAATCTTGCCAATAAATGCTTAGAATTGAATGGAAAAAAACGACCAACTATGAAAGAAGTGACATTAGAATTAGAAGGGATCAAGAGATTGAATAAGAAGTCCAATGCAGAGGAAAGCCATGAAGAAATTGAGCTTACTGAAATTAAAGATTATCAACCTTGGACTGGATATTCTACATCAACTCCATTTCCAACTGTAAGCAGCGAAACAATCTCCTCACACTCGGAGATTATACCCATTATTACTTTAGAATAA 2154 0.3942 MILQFAFHVIIWTTWTVYALASAETPIIAQPGCNSTCGDIEIPFPFGMKDPKCYLDKWFEIECRFSSRGLKPYLKSFNLEVESINEDVAEVDIMNPIYHRNCQNNKAKPTVINLRESPFVYSQDRNKFLAVGCNNLAFLQSNGTAVGGCVSVCDDNEEVDDNFNFARDGCHGRYCCETSLPHYLVEYNATLQDLKNESVNGKCSYAFIVSNDWIQVQSYYYYWSDLMAERFNELQSVDYVRATLEWEILNETLANSTLQIPSDARCHESNVTSSTNTTTGLRCLCPVGSYGNPYINGGCIAMPGYFDKSSRGKRWAIVGVSSSFGSIIVLLCLWLLYKAVRKRAIQKRKQKFFKKNGGLLLQQRMSSGEVNVDKTILFSLKDLEKATDHFNINRILGKGGQGTVYKGMLVDGRIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFQYLHEQNEDLPMTWDMRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDDKYKAKIADFGASRIISIEATHLTTVVQGTFGYLDPEYFHTSKFTEKSDVYSFGVVLAELLTGKKPISSFRGESKGLASYFVQCMEENNLFDIIDKRVMKEAEKEHIIAVANLANKCLELNGKKRPTMKEVTLELEGIKRLNKKSNAEESHEEIELTEIKDYQPWTGYSTSTPFPTVSSETISSHSEIIPIITLE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1988 717 ProSiteProfiles Protein kinase domain profile. 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1988 717 Gene3D Transferase(Phosphotransferase) domain 1 464 685 - -
Apr1g1988 717 CDD STKc_IRAK 396 660 - -
Apr1g1988 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Apr1g1988 717 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 17 715 - -
Apr1g1988 717 SMART serkin_6 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1988 717 Pfam Wall-associated receptor kinase galacturonan-binding 33 90 IPR025287 GO:0030247
Apr1g1988 717 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 715 IPR045274 GO:0007166
Apr1g1988 717 Gene3D Phosphorylase Kinase; domain 1 355 463 - -
Apr1g1988 717 SUPERFAMILY Protein kinase-like (PK-like) 375 655 IPR011009 -
Apr1g1988 717 Coils Coil 650 670 - -
Apr1g1988 717 Pfam Protein kinase domain 391 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1988 Apr-Chr1 29409453 29413350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1988 10 661 Receptor kinase-like Gene Family AT1G69730 42.643 5.05e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Apr1g1988 Pkinase 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1988 - - gmx:100798794 976.852