Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1980 ATGGATTCTTCAATGGGAGGTGTTGATGGGTCTGGTGATGAAGGCACTCATACCTCACACAAGGGAAAAAGACCCTCCTACAAACGTCTTAGTTCTGCTCAAACAGCCAAACTTGAAAAATTCATCAAGGAGTGCCCACATCCTGACGAAACCCAACGACGCCAATTAGCCACCGAGGTTGGGCTTGAGCCTAAACAAATTAAGTTTTGGTTTCAAAATAAGAGGACTCAAATTAAGAATCAACACGAGAGAGCAGATAACACTGCTCTTCGGGTTGAGAATGATAGGATAAATAGTGAAAACGAATTCATGAAAGAGGCGTTGAAGAATATGCTTTGCCCATCTTGTGGGGGTCCACCATATGCAGAAGGAGAGCATGAACACTTTATGCAAAAGATGCAACTCGAAAATGCTCAACTAAAAGATGAGCATGACAAAGTGTCTAGACTTCTTGCAAGGTACTTGGAGAAACAAATGTCACAACCTGAGTTGCAACAAACTGTTATTCCTATCACAGGTTCAACTTCATATGATCCACCACATGGAAGTTCACTTAACCATGTGATTGATGAAAGTCTATGTCTTGATCAAAGTTTTAGTACACAAGTTATAGATGATCTATTATTGTCGAACTCATTGGGAGGTGTAGATGTAGAGAAACCATTTATGTTAGAGGTTGCTACTACTGCAATGGAAGAATTAGTTAGGCTTCTTCGCATCAATGAGCCCTTTTGGATCAAGTCTTCAACTCAAGATGGGAAGCTTGTTCTTCATCGTGAAAGTTATGAGAAAATATTTTCAAGAACCAAACAATTCAAAGGTGCCAACATACATGTAGAAGCAACAAAAGATTCAGGGATGGTTAACATTAGTGGCATTCAGCTAGTTGAAATGTTTCTAGATTCGGACAAGTGGGTTAATCTGTTCCCAACAATTGTTACAAAAGCAGAAACAATTAAAGTACTAGAAAGTGGTTTCTTAGGAAATCGAAGTGGAGCCTTGCAGTTGATGATTGAAGAAATGCATATTCTTTCACCTTTAGTGCAAGCTCGTAAATTTCAATTCCTTCGCTATTGTCAACAAATTGAAGATGGTCAATGGGTGATAACAGATGTGTCATTTGATCCCTTTCAACAGAACAATTCTCCTTCTCGATCTTGGAGGCATCCATCTGGATGCTTGATTCAAGAAATGCCTAATGGGTATTCCATGGTTACTTGGGTTGAACACGTGGAGGTGGATGATAAAATCCAAACGCACCCACTGTACAGAGATATTGTTAGTATCAATATGGCATATGGAGCAGAAAGATGGATGATGGAACTTCAAAGAATGTGTGAAAGATTTGCTTGGTTTTATGTTGAAAAGATAGCCAATCATGGCTTTGAAGGAGTGATCAATTCACTTGAAGGGAGGAGGAGTGTAATGAATTTTTCTCATCGAATGCTTAAAATCTTTTGTCAAAGTTTAACAATGTCGGGTAACTTGGACTTCCCACATTTAACTATGGAGAATAATAGCGGTGTTAGGGTCTCCATCCGAAAAAACACAAACCTTGGTCAACCAAATGGCATGATTGTTGTAGCTGCTACATCCCTTTGGCTACCTCTCCATTATTTGAAAATTTTTGAGTTCTTCACAGATGAAAAAAGACGAGCTCAGTGGGATGTTCTTTCCTGTGGAAATCCAGTGCACAAGGTTGCGCACATCTCACATGGAACTCATCCTGGCAATTGTACATCAATTATCCGGCCATTCATCCCTAGCGAGAACAATGCGTTGATTCTTCAAGAAAGTCTTACAAATTCCATGGGATCATATGTTGTATATGCTCCAACCGATGTAAGAACTATGAATATGGCTATACAAGGGGAAGACTCTTCATTGCTACCAATTCTTCCATCGGGTTTTGTTATCGTTGCACATGATGATCCAAATGCAAATTTAGGAGCATTTGATAATACAAATGTTGATAGATCAGAAGGCTCATTATTGACTGTGGCTTTCCAAATATTGGCTTGTAGTCCAAGTGGAATCAATCTGTTAAATATGGAATCTGTGGCAGCTGTGAATACCCTTTTAACCTCAACAATCCTAAAAATAAAGGATGCTCTAAATTGTAGTAACTTGGAGTAA 2136 0.3909 MDSSMGGVDGSGDEGTHTSHKGKRPSYKRLSSAQTAKLEKFIKECPHPDETQRRQLATEVGLEPKQIKFWFQNKRTQIKNQHERADNTALRVENDRINSENEFMKEALKNMLCPSCGGPPYAEGEHEHFMQKMQLENAQLKDEHDKVSRLLARYLEKQMSQPELQQTVIPITGSTSYDPPHGSSLNHVIDESLCLDQSFSTQVIDDLLLSNSLGGVDVEKPFMLEVATTAMEELVRLLRINEPFWIKSSTQDGKLVLHRESYEKIFSRTKQFKGANIHVEATKDSGMVNISGIQLVEMFLDSDKWVNLFPTIVTKAETIKVLESGFLGNRSGALQLMIEEMHILSPLVQARKFQFLRYCQQIEDGQWVITDVSFDPFQQNNSPSRSWRHPSGCLIQEMPNGYSMVTWVEHVEVDDKIQTHPLYRDIVSINMAYGAERWMMELQRMCERFAWFYVEKIANHGFEGVINSLEGRRSVMNFSHRMLKIFCQSLTMSGNLDFPHLTMENNSGVRVSIRKNTNLGQPNGMIVVAATSLWLPLHYLKIFEFFTDEKRRAQWDVLSCGNPVHKVAHISHGTHPGNCTSIIRPFIPSENNALILQESLTNSMGSYVVYAPTDVRTMNMAIQGEDSSLLPILPSGFVIVAHDDPNANLGAFDNTNVDRSEGSLLTVAFQILACSPSGINLLNMESVAAVNTLLTSTILKIKDALNCSNLE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1980 711 CDD START_ArGLABRA2_like 220 447 - -
Apr1g1980 711 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 707 - -
Apr1g1980 711 SMART HOX_1 23 85 IPR001356 GO:0003677
Apr1g1980 711 SUPERFAMILY Bet v1-like 217 449 - -
Apr1g1980 711 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Apr1g1980 711 Coils Coil 130 157 - -
Apr1g1980 711 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 707 IPR042160 -
Apr1g1980 711 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Apr1g1980 711 Gene3D - 11 95 - -
Apr1g1980 711 Pfam START domain 225 448 IPR002913 GO:0008289
Apr1g1980 711 SMART START_1 225 448 IPR002913 GO:0008289
Apr1g1980 711 Gene3D - 224 434 IPR023393 -
Apr1g1980 711 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Apr1g1980 711 CDD homeodomain 21 82 IPR001356 GO:0003677
Apr1g1980 711 MobiDBLite consensus disorder prediction 1 32 - -
Apr1g1980 711 SUPERFAMILY Bet v1-like 471 671 - -
Apr1g1980 711 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Apr1g1980 711 ProSiteProfiles START domain profile. 216 451 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1980 Apr-Chr1 29338820 29345050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1980 18 706 Homeobox Transcription Factor Family AT1G73360 45.312 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g1980 START 6.4e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1980 K09338 - gmx:100795075 1025.77