Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1979 ATGGATGTGTCCATGGGAGCTGCTGCTGGTGGGTCTGGTGATGAACACGAAAATCAGAACCCTCAAAAAGGGAAAAAGACCTACCATCGTCACACCTCCGATCAAACAGCTAGGCTTGAAGCAATATTCAGCGAGTGCCCTCATCCAGATGAAGGCCAAAGGCGTCAAATAGCCAAAGAGCTTGGGCTGGCTCCGAAACAAGTCAAGTTTTGGTTTCAGAATAAGAGGACTCAGAAAAAGACTCAAGGGGAGCGAGCTGATAACAACGCTCTTCGTGTTGAGAATGAAAGGATGCTGAAAGAAAATCGCCTAATCAAAGAGGCATTGAAGACTATAATCTGCCCATCATGTGGGGGGCCACCCTATGGAGATGAAGAACATACTCTCAAGCAACTCCGCCTTGAAAATACACGTCTCAAAGCAGAGCGTGAGAACGTGTCTAAACTTCTTGCAAAGTACTTGGAGAACCCGATGGTAGAACCAGAGTTGGAGCTAGCTACTACAGGATCTTCTTCATCACATGATCCATTACTGAAACTAACGGTTGATGGTGCTTGCATGAATGTTGGTGGTTCAACAAATGTTTCATTCCCAGATGAAGATATAATGTTCAACCCTGTGGAGTGCAAAATATCAGACATGGAAAAAGCAATGATGTTACGGGCTGCAATGAATGCTAAGGAACAATTACTCAAGCTTTTGGCAGCGAATGAGCCCTTGTGGATAAAGTCTTCAACTGATCGTAGATTTGTTCTTCATCCTGAAAACTATGAAGAGCTCTTTCCAAGGGCTAATCACTTCGAAAATTCCAAGGGGCGTGTGGAATCATCAAAAGGTTCACGAATAGTGAGAATTAAGGCGATGCAATTGGTTGACATGCTTTTAGATTCGAGAAAATGGACAAATCTTTTCCCAACAATTATTACAAAGGCGCGCACACTCGAAGTACTTGAAAACGGTTCGTTGGAAAATCGAAGTGGAGCTTTGTTGTTGATGCATGGAGAGATGCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCTTCATTGTTCGCTATTGTGAACAAGTTGAAGCTGGTATATGGATGGTAGCAGATGTGTCCGTTGAGTACATGAAAGAGAACAACCCTAATCTTTCCTTTTGGAAGTTACCCTCTGGATGCATGATTCACGAAATTTCTAATGGGTCATGCCAGGTTTTTTGGGTTGAACATGTGGAATTGGATGAAAATGTTCAAACGCACCAGCTGTATAGAGATCTTATTAATGGCAGCATTGCATATGGAGCAGAGAGATGGCTTATGGAACTTCAAAGAATGTGTGAAAGGTTTACTAGTGCCGAATCTGAATACATCCCTGATTATGACACCGGAGTGATCACTCTACCTGAAGGAAGGAGGAGTATGATGAGGCTTTCTCATCGAATGGTTAAGAACTTTTGTGCAATTTTAAACATGTCAAATAAGATGGATTTCCCACAACATTTAGCTGAGGAGAATAGTGGGGTTAGGATCTCCGTTCGCAAAAGCAGAAACCCAGGCCATCCAATTAGTGCCATGTTTATCATTACTGCTGCTATCTCTTTCTGGCTTCCTCTTCCTTCTAAGAATCTTTATGACTTCTTTAGAGATCCAACAAACCGTGTTAAGTGGGATGCTCTTTGTTATGGAAATCCAGTGCGCGAGATTGCTCGCATCGCCACCGGAAGTCATCCTAGTAACTATGTATCAATTATTCGGCTTGTGAACCCAAATCAGAACGGTGTGGCGATCATTCAAGAAAGTTTTATTGATCCTTTGGGATCATATGTGGTGTATTCTCCTATTAATATATCAGACATAGAGAGGATTATAAATGGTGAAGATTCAGCATTGGTGTCAGTTCTTCCATCAGGCATTGTGATATCAGAAGATGAACAATCTATTGCAAATGCTCGAGCATCTAGCAGTGGAGATGGTGACAAAAGCACAAGAGGGTCACTCATAACTGTGGCTTTCCAAATACTCATGTGTAATCCTGCTGCTATGAACTTGGAATCTGTGGCTGCTGTTAACTCGCTCATAACCTCTACAGTCCATAACGTAAAGGATGCTTTGCTCAGTGATTACCATTTGATGTTTTAG 2124 0.4237 MDVSMGAAAGGSGDEHENQNPQKGKKTYHRHTSDQTARLEAIFSECPHPDEGQRRQIAKELGLAPKQVKFWFQNKRTQKKTQGERADNNALRVENERMLKENRLIKEALKTIICPSCGGPPYGDEEHTLKQLRLENTRLKAERENVSKLLAKYLENPMVEPELELATTGSSSSHDPLLKLTVDGACMNVGGSTNVSFPDEDIMFNPVECKISDMEKAMMLRAAMNAKEQLLKLLAANEPLWIKSSTDRRFVLHPENYEELFPRANHFENSKGRVESSKGSRIVRIKAMQLVDMLLDSRKWTNLFPTIITKARTLEVLENGSLENRSGALLLMHGEMHVLSPLVPSREFFIVRYCEQVEAGIWMVADVSVEYMKENNPNLSFWKLPSGCMIHEISNGSCQVFWVEHVELDENVQTHQLYRDLINGSIAYGAERWLMELQRMCERFTSAESEYIPDYDTGVITLPEGRRSMMRLSHRMVKNFCAILNMSNKMDFPQHLAEENSGVRISVRKSRNPGHPISAMFIITAAISFWLPLPSKNLYDFFRDPTNRVKWDALCYGNPVREIARIATGSHPSNYVSIIRLVNPNQNGVAIIQESFIDPLGSYVVYSPINISDIERIINGEDSALVSVLPSGIVISEDEQSIANARASSSGDGDKSTRGSLITVAFQILMCNPAAMNLESVAAVNSLITSTVHNVKDALLSDYHLMF* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1979 707 SUPERFAMILY Bet v1-like 213 444 - -
Apr1g1979 707 CDD homeodomain 25 82 IPR001356 GO:0003677
Apr1g1979 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 699 - -
Apr1g1979 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 699 IPR042160 -
Apr1g1979 707 SUPERFAMILY Homeodomain-like 9 82 IPR009057 -
Apr1g1979 707 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Apr1g1979 707 Coils Coil 122 156 - -
Apr1g1979 707 MobiDBLite consensus disorder prediction 18 34 - -
Apr1g1979 707 SMART HOX_1 24 86 IPR001356 GO:0003677
Apr1g1979 707 Gene3D - 11 100 - -
Apr1g1979 707 CDD START_ArGLABRA2_like 216 442 - -
Apr1g1979 707 ProSiteProfiles START domain profile. 212 446 IPR002913 GO:0008289
Apr1g1979 707 SUPERFAMILY Bet v1-like 462 668 - -
Apr1g1979 707 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Apr1g1979 707 Gene3D - 221 443 IPR023393 -
Apr1g1979 707 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Apr1g1979 707 SMART START_1 221 443 IPR002913 GO:0008289
Apr1g1979 707 MobiDBLite consensus disorder prediction 1 34 - -
Apr1g1979 707 Pfam START domain 225 443 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1979 Apr-Chr1 29327938 29334795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1979 23 699 Homeobox Transcription Factor Family AT1G73360 43.040 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g1979 START 5.8e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1979 K09338 - gmx:100794552 876.7