Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1964 ATGGCTAACTACACACACCCTCATATCTGTCAATGTTTGAGTCGTTTGCTAGCTTTCCGGCGACATTTTCCGGTCACAATCGCCGGCCACCGCCGTAAGAGCGGCCAACAGTTGGTGGAGGAAGTGTTGTCATTGGCACAAGGCCTGCTCCAGCTAGGACTCGCACCTGGTGATGTGGTTGCTATCTGTGCTTACAACAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCTTTTGTTGGAGGAATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGGAAGCAGTGAGGCCAGTGATGTTTGTGACTGATGAAAGCTGCTACACATGGTACTCAAAACTCCATCAAAATGACATTCCATCTCTGAAGTGGCATGTTTTGTTGGATTCCCCTTCCTCAGATTTTACAATGTGGAATGTGTTTACTCCAGAAATGCTTAAGGGGCATCCTGTAAAGCTTCTACCATTTGATTACACCTGGGCTTCTGAAGGAGCTGCAATAATATGTTTTACTTCAGGAACTACTGGAAAGCCTAAGGGAGTTACCCTAAGCCATGGAGCTCTTATCATACAATCTCTAGCCAAGATTGCCATAGTTGGGTACAATGAGGATGATGTCTATCTACATACTGCTCCATTATGCCATATTGGTGGCTTGTCGTCAGCCCTGACCATGCTCATGGTTGGAGGTTGCCATGTCTTGATGCCAAAGTTTGATGCAGAATCGGCTGTTGGCACCATAGAGCAATATACCGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTATAATTAGGCACAAAGAGACCTGGAAAGGGGGAGACACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAAGACACTAGCATACTCTTCACCAAAGCTAAACTTATTTCAGCTTATGGGATGACAGAATCATGCTCCTCATTGACATTCCTGACACTCTATGACCCAATGCATGAAACCACTAGCCAGCTCCTTCAAACATTTGGTGTGGCAGGATCGAATCTCATTCACCAGCCCCAAGGTGTTTGTGTTGGCAAGGCTGCACCTCACGTAGAACTGAAGATATGTGCAGATGCTTGTGGTCACATTGGGAGAATTCTAACTAGAGGACCACATATAATGCTCAGGTATTGGGATCAAACTCTCACAAATCCATTTAATCCGTATACCGAAGCCTGGCTTGACACAGGTGACATTGGATCAATTGATCGTTATGGTAATTTGTGGCTCCTTGGACGAACAAACGGTCGTATCAAGAGTGGTGGAGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTACAACATCCAGCGATTGCAAGTGTTGTTATTGTGGGAATCTCGGATGCTCGCTTGACAGAGATGGTGGTAGCATGTATCCAACTAAGGGAACATTGGCTTTGGTCAGAGCAGTCTGATTCAAATGAAGAGTTTCACCTATCTAGAAAGAACCTCCAGCAATATTGTATGCAAAATCAATTAAGCAGATTTAAGATACCAAAATTATTTATTGTATGGAGGAAGCCATTTCCAGTCACTACCACAGGAAAAATAAGAAGAGACCAAGTCCGAAAGGAAGTTATGTCTCAGCTACAATTTTTGCACAGTAATCTTTGA 1680 0.4405 MANYTHPHICQCLSRLLAFRRHFPVTIAGHRRKSGQQLVEEVLSLAQGLLQLGLAPGDVVAICAYNSDWYLEWLLAIAFVGGIAAPLNYRWSFEEARLAMEAVRPVMFVTDESCYTWYSKLHQNDIPSLKWHVLLDSPSSDFTMWNVFTPEMLKGHPVKLLPFDYTWASEGAAIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSALTMLMVGGCHVLMPKFDAESAVGTIEQYTVTSFITVPAIMASLISIIRHKETWKGGDTVKKILNGGGSLSLELIKDTSILFTKAKLISAYGMTESCSSLTFLTLYDPMHETTSQLLQTFGVAGSNLIHQPQGVCVGKAAPHVELKICADACGHIGRILTRGPHIMLRYWDQTLTNPFNPYTEAWLDTGDIGSIDRYGNLWLLGRTNGRIKSGGENIYPEEVEAILLQHPAIASVVIVGISDARLTEMVVACIQLREHWLWSEQSDSNEEFHLSRKNLQQYCMQNQLSRFKIPKLFIVWRKPFPVTTTGKIRRDQVRKEVMSQLQFLHSNL* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1964 559 Pfam AMP-binding enzyme C-terminal domain 449 538 IPR025110 -
Apr1g1964 559 PANTHER ACYL-COA SYNTHETASE 6 550 - -
Apr1g1964 559 Pfam AMP-binding enzyme 27 440 IPR000873 -
Apr1g1964 559 Gene3D - 436 552 IPR045851 -
Apr1g1964 559 CDD AFD_class_I 173 540 - -
Apr1g1964 559 SUPERFAMILY Acetyl-CoA synthetase-like 6 551 - -
Apr1g1964 559 Gene3D - 2 434 IPR042099 -
Apr1g1964 559 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 6 550 - -
Apr1g1964 559 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1964 Apr-Chr1 29186184 29192116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1964 42 546 Monolignol Biosynthesis Gene Families AT4G19010 26.769 2.34e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1964 K14760 - gmx:100809925 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1964 1 29186184 29192116 Apr1g1964 1 29186184 29192116 ECH