Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1963 ATGGAACTTGCAAGGCCTGCTTCAGGTAGAAGAAGATTGAAAGATTTGTTGCTTCAGAGTGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCCAAATGGGCATCTGCAAACATTGGAGTTTTTATATGCCTAAAATGCTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACGTTGGATGATTGGTCAGACGATGAAATAGATGCAATGATTGAAGTTGGGGGAAATGCTTCTGCCAATTCAATTTATGAGGCATATATTCCAGAAGGATGTACTAAACCTGGAGCAGATGCTGGTCACGAGCAGCGTGCAAAGTTCATTCGGTCAAAATATGAACTTCAAGAATTTTTGAAACCAAGTTTGCGCATTGTGTCTGGAAAGAGCAGTCTAGATTCAAGTTCTTCCAAAAGTTTTATGGATAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGGAAGGTATGGTACAATTTATTGGAATGCTGAAGGTGAAAGTGATCAAAGGCACAAATTTAGCAATCAGGGATATAAAGTCAAGTGATCCATATGTTATTTTGAACCTTGGCCAGCAGACTGTCCAGACAACTATTGTGAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATATATGCTGTCTGTTCCTGAGCACTATGGACCACTGAAATTGAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCACTAATAACATCTGCTATGGCCTTCGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATCCACTTATTGAGGATAGCACGGTGAATATTGTTGATGGTAAAGTTAAACAAATGATGTCGCTCAAGCTCCAGAATGTTGAATGTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 972 0.393 MELARPASGRRRLKDLLLQSDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSDDEIDAMIEVGGNASANSIYEAYIPEGCTKPGADAGHEQRAKFIRSKYELQEFLKPSLRIVSGKSSLDSSSSKSFMDSFKSTSSSQRMEGMVQFIGMLKVKVIKGTNLAIRDIKSSDPYVILNLGQQTVQTTIVRSNLNPVWNEEYMLSVPEHYGPLKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNPLIEDSTVNIVDGKVKQMMSLKLQNVECGELDLELEWIPLDQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1963 323 CDD C2_ArfGAP 166 310 - -
Apr1g1963 323 ProSiteProfiles C2 domain profile. 148 264 IPR000008 -
Apr1g1963 323 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Apr1g1963 323 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Apr1g1963 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 323 IPR044518 GO:0005096|GO:0005543
Apr1g1963 323 CDD ArfGap 13 119 - -
Apr1g1963 323 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Apr1g1963 323 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Apr1g1963 323 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Apr1g1963 323 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Apr1g1963 323 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Apr1g1963 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 323 - -
Apr1g1963 323 Pfam C2 domain 168 257 IPR000008 -
Apr1g1963 323 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Apr1g1963 323 Gene3D C2 domain 164 323 IPR035892 -
Apr1g1963 323 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 163 261 IPR035892 -
Apr1g1963 323 SMART C2_3c 168 263 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1963 Apr-Chr1 29177149 29183726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1963 3 323 C2H2 Transcription Factor Family AT4G05330 74.468 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1963 K12486 - gmx:100810806 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1963 1 29177149 29183726 Apr1g1963 1 29177149 29183726 ECH