Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1960 ATGACTTCCTCTACTCATGACCTCACAGATAATGAAGCTGATGGGCAGCAGCAGTCAGAATCACAGATGCAACCTTCTGCAAATGGAATTTCTCATGCAAGTATTGGTACTCAGAATGTTCAGTATGCAACACCTACACAGCTTGGAACTGAGCATGCTATGGCACCGCCACCCCCTTACCCATATCCAGATCCGTACTACAGAAGTATCTTTGCCCCCTATGATGCACAACCTTACCCCCCACAGCCCTATGGTGGACATCCAATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGACTACCAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATTCAAAGAAAACTGAGAATCAACAGAATGAGGTTGCATCAACTGAAGAATCACAGTCCAATGCCAGTCTCAATTCTGATAAAAATGAGCTTACACCATCAGATAGAACATCCTAA 618 0.4401 MTSSTHDLTDNEADGQQQSESQMQPSANGISHASIGTQNVQYATPTQLGTEHAMAPPPPYPYPDPYYRSIFAPYDAQPYPPQPYGGHPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKTTRNRKPYLHESRHLHALRRARGCGGRFLNSKKTENQQNEVASTEESQSNASLNSDKNELTPSDRTS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1960 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Apr1g1960 205 MobiDBLite consensus disorder prediction 168 199 - -
Apr1g1960 205 MobiDBLite consensus disorder prediction 1 38 - -
Apr1g1960 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Apr1g1960 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Apr1g1960 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Apr1g1960 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Apr1g1960 205 MobiDBLite consensus disorder prediction 127 143 - -
Apr1g1960 205 MobiDBLite consensus disorder prediction 144 159 - -
Apr1g1960 205 Gene3D - 109 170 - -
Apr1g1960 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 187 IPR001289 GO:0003700|GO:0006355
Apr1g1960 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 187 - -
Apr1g1960 205 MobiDBLite consensus disorder prediction 125 205 - -
Apr1g1960 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1960 Apr-Chr1 29160606 29167106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1960 1 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.173 5.28e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr1g1960 CBFB_NFYA 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1960 K08064 - gmx:100809036 344.354