Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1959 ATGGCACTTTCTATGCACAAGGACTCATCCAACAACCAGATGGATTCTAGTAAGTATGTGAGGTATACACCTGAGCAAGTTGAGGCTTTGGAAAGGGTCTATGCAGAATGCCCAAAGCCAAGTTCTTTGAGGAGACAACAACTCATCAGAGAGTGTCCAATACTCTCCAATATTGAACCCAAACAGATCAAAGTTTGGTTTCAAAACCGAAGATGTCGTGAGAAGCAGAGGAAGGAAGCTTCTCGGTTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGCTGTTGATGGAAGAGAATGACCGTTTGCAGAAGCAGGTCTCACATCTGGTTTACGAAAATGGATATATGAAGCAACAGATACAGACTGCTTCTGCTGCTACCACCACAGATAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACACCTCAGCATCCTCAGAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATCGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCGGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACGAAGGTTGCTGAGATTCTTAAAGATCGGCCGTCGTGGTATCGTGACTGCCGATGCGTTGATGTGTTGAGCATAGTCCCCACAGGAAATGGGGGCACAATTGAGCTCATGTACATGCAGACATATGCGCCTACAACGTTGGCAGCAGCACGGGACTTCTGGACCTTACGATACACTTCAAGTCTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCGTTGACTACTTCAACTGGTGGCCCCAAAGGCCCTCCTTCTTCAACATTTGTGAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTCGACCATGCGAGGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCATCCAAAATCTTGGCTCAGAAACTGACTATTGCTGCCTTGCAACATATAAGACAAATAGCACAAGAATCAAGCGGAGAGATTCAGTATGGTGGGGGACGCCAGCCTGCTGTCTTGAGGACATTCAGTCAAAGACTTTGCAGGGGATTTAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCACTGTTGGGTACTGACGGGGTGGAAGATGTGACTATAGCCATAAACTCGTCTCCAAATAAATATTTGGGGTCCAATTACAATTCATCAATGTTCCCTGCATTTGGAGGTGGGGTCTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGTTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCAGCTGCATGCCTTAAGGCTAGTCCCTATGCAATTCCTTGTGCAAGACCCGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCACTTGCTCACACTATTGAGCATGAGGAGTTCCTGGAGGTGGTTCGCATAGAGGGTCATGCATTTTCGCCTGAGGATGTTGCGTTGGCACGGGATATGTTTCTATTGCAGCTGTGCAGTGGAGTCGATGAAAATGCAATTGGTGCATGTGCTCAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTTTTACTGCCTTCTGGTTTTCGTGTCATTCCATTGGATCCCAAAACAGATGGTCCAGCTACGACTAGAACCTTGGATTTGGCATCAACGCTTGAGGTTGGGTCTGGCAATGCTCGTCCAGCTGGTGAAGCTGATTTGAATGGCTACAACCTTAGATCGGTCCTTACTATTGCATTCCAATTTACCTTTGAAAACCATTTGCGGGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGATCTGTTCAAAGGGTTGCCATGGCAATTGCCCCTTCAAGGCTCAGTGCCCAGCCTGGGCCAAAGTCGCTTCCTGGTTCACCAGAAGCTCTTACTTTAGCACGTTGGATCTGTAGAAGCTACCGGATCCACACTGGCACAGAACTTTTTAGAGTTGAGTCCACGGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCTGATGCAATTATGTGTTGTTCTTTCTTGCAGGCATCTCCAGTATTCACCTTCGCAAACCAGGCTGGACTAGACATGCTTGAGACTACTTTGGTTGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAATCTGGCAGGAAGGTTCTTTGCTCTGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCGACAGGGATATGTGTATCCAGCATGAATAGGCCAGTATCCTATGAGCAAGCCATTGCATGGAAAGTCCTCAATGATGATGATTCTAATCACTGCCTAGCCTTCATGTTCATGAACTGGTCTTTTGTTTGA 2538 0.472 MALSMHKDSSNNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAATTTDNSCESVVMSGQNQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSSLEDGSLVICERSLTTSTGGPKGPPSSTFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGTDGVEDVTIAINSSPNKYLGSNYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAIPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMFLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDGPATTRTLDLASTLEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSAQPGPKSLPGSPEALTLARWICRSYRIHTGTELFRVESTAGDAILKQLWHHSDAIMCCSFLQASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKVLCSEFSKIMQQGFAYLPTGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1959 845 CDD homeodomain 18 78 IPR001356 GO:0003677
Apr1g1959 845 Pfam START domain 167 374 IPR002913 GO:0008289
Apr1g1959 845 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g1959 845 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Apr1g1959 845 MobiDBLite consensus disorder prediction 133 157 - -
Apr1g1959 845 Pfam MEKHLA domain 701 844 IPR013978 -
Apr1g1959 845 CDD bZIP 70 109 - -
Apr1g1959 845 SMART START_1 166 376 IPR002913 GO:0008289
Apr1g1959 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 845 - -
Apr1g1959 845 Coils Coil 87 107 - -
Apr1g1959 845 SMART HOX_1 15 81 IPR001356 GO:0003677
Apr1g1959 845 Gene3D - 9 84 - -
Apr1g1959 845 SUPERFAMILY Bet v1-like 167 378 - -
Apr1g1959 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 845 IPR044830 GO:0003700
Apr1g1959 845 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Apr1g1959 845 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Apr1g1959 845 Gene3D - 185 378 IPR023393 -
Apr1g1959 845 MobiDBLite consensus disorder prediction 133 159 - -
Apr1g1959 845 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Apr1g1959 845 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1959 Apr-Chr1 29139143 29144634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1959 5 845 Homeobox Transcription Factor Family AT2G34710 79.669 0.0 1387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g1959 START 5.6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1959 K09338 - gmx:100807428 1603.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1959 1 29139143 29144634 Apr1g1959 1 29139143 29144634 ECH