Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1953 ATGAGCTCTCTTCGTCTCATAGCAATGGCTTTAAGTTGTGCAGTGGTAGTGCTTGGAGGGTTACCCTTCTCCGCAGATGCACAATTAGATCCCGATTTTTACAAGAATACTTGTCCCCAGGTGCATTCTATTGTACAAAAAATCTTAAAGGACGTTTCAAAATCGGATCCTCGTATGCTTGCCAGTCTCGTCAGGCTTCACTTTCACGACTGTTTTGTTCAAGGTTGCGACGGATCAATTTTGTTGAACGATACAGCTACGATCGTGAGCGAGCAAACTGCAGCACCAAATAACAACTCGATAAGAGGTTTGAATGTTGTGAATCAGATAAAGACTGCGTTGGAAAATGCTTGTCCTCGCGTAGTTTCTTGCGCTGATATTCTTGCCCTTGCTGCTCAAGTATCTACTTATCTGGCTAATGGTCCTTGCTGGAAAGTTCTCTTGGGAAGAAGGGATAGTTTAACAGCAAACAAAACCCTTGCTAATCAAAACCTTCCAGCTCCTTTCTTCAACCTAACCCAACTTAAAGCCGCTTTTGCTGCCCAAGGCCTCAACACTACAGATCTAGTTACTCTCTCAGGTGCTCATACATTTGGTAGGGGTCAGTGCTTTTTATTCGTTAATCGATTGTACAACTTCAGCGGCACAGGGAAACCTGATCCAACCCTCAACACAACTTACTTAGAACAATTGCGCAAAATATGCCCCAATGGTGGACCTGGGACTACCCTCACCAATTTGGACCCTACCACACCTGATAAATTCGACGAGAACTACTACTCCAACCTTAAGGTTCACAAGGGTCTATTTCAAAGTGACCAAGAGCTGTTCTCAACAACCGGTGCTGATACCATTAGCATTGTCAACAAGTTCAGTAGTAGCCAAGAAACTTTCTTTAAGAACTTTGAGGCTTCCATGATAAAAATGGGTAATATTGGTGTGCTAACGGGGACAAAAGGAGAAATCCGAAAACAGTGTAATTTTGTTAACAAAAAATCTGCTGAACTTGATATTGCTAGCGTGGCCTCTGAAGAATGGTCACCGGATGGTATGCTTAGCTCAATACATTATTCGTACCATGTGTCCGTGGCTACAAAGCGTTCCCAACAGAACGGAAACATGAGTTCCCTTCTCACACTCAAAGTAGCTTTGTGCTGTGTAGTGATTGCCATTGGAGCACTACCCTTCTCCTCAGATGCACAGCTAGACCCTTCCTTCTACAAGAATACATGTCCCAAAGTCCATTCCATTGTGCGTGATGTCATCAGAAACGTTTCTAAATCAGATCCACGAATGCTTGCTAGCCTCATAAGGCTCCACTTTCATGATTGTTTTGTTCAAGGGTGTGATGGATCAGTTTTGTTGAATGATACGAGTACGATTGTGAGTGAGCAAGGTGCAGCGCCAAACAACAACTCCATAAGAGGTTTGGATGTTGTGAATCAGATAAAGACTGCAGTGGAAAATGCTTGTCCTGGCGTAGTTTCTTGTGCTGATATTCTTGCCCTTGCTGCTGAGATATCCTCTGTTCTCGCTCATGGTCCCGATTGGAAAGTTCCACTCGGAAGAAGGGATAGTTTAACAGCAAATCAAACTCTTGCTAATCAAAATCTTCCAGCCCCTACTTTCACCCTTGATCGGCTTAAATCTGCATTTGCTAATCAAGGCCTCAACACCACTGATCTTGTTGCACTTTCAGGTGCTCATACAATTGGTAGAGCTCAGTGTAGATTTTTCGTTGGTAGATTATACAATTTCAACAGCACTGGCAATCCTGATCCTACTCTCAACACAACCCTTTTGCAATCATTACAAGTAATATGCCCCAATGGGGGACCAGGGACTAATCTCACCAATTTGGACCTAACCACTCCTGATACATTCGACTCTAACTACTACTCCAATCTTCAACTTCAAAATGGCTTACTTCAAAGTGACCAAGAGTTGTTTTCCACAAGTGGTGCAGATACCATTTCCATTGTCAACAGTTTCAATAGTAACCAGACTCTATTCTTTGAAAACTTTAAGGCATCAATGATAAAAATGGGCAACATTGGAGTACTAACAGGATCTCAAGGAGAAATTCGAACACAGTGTAATTTTGTCAATGGAAATTCCTCTGGATTGACTACTCCAATAACTAAAGAAACATCAGAAGATGACATGATTAGCTCAATTTAA 2181 0.4237 MSSLRLIAMALSCAVVVLGGLPFSADAQLDPDFYKNTCPQVHSIVQKILKDVSKSDPRMLASLVRLHFHDCFVQGCDGSILLNDTATIVSEQTAAPNNNSIRGLNVVNQIKTALENACPRVVSCADILALAAQVSTYLANGPCWKVLLGRRDSLTANKTLANQNLPAPFFNLTQLKAAFAAQGLNTTDLVTLSGAHTFGRGQCFLFVNRLYNFSGTGKPDPTLNTTYLEQLRKICPNGGPGTTLTNLDPTTPDKFDENYYSNLKVHKGLFQSDQELFSTTGADTISIVNKFSSSQETFFKNFEASMIKMGNIGVLTGTKGEIRKQCNFVNKKSAELDIASVASEEWSPDGMLSSIHYSYHVSVATKRSQQNGNMSSLLTLKVALCCVVIAIGALPFSSDAQLDPSFYKNTCPKVHSIVRDVIRNVSKSDPRMLASLIRLHFHDCFVQGCDGSVLLNDTSTIVSEQGAAPNNNSIRGLDVVNQIKTAVENACPGVVSCADILALAAEISSVLAHGPDWKVPLGRRDSLTANQTLANQNLPAPTFTLDRLKSAFANQGLNTTDLVALSGAHTIGRAQCRFFVGRLYNFNSTGNPDPTLNTTLLQSLQVICPNGGPGTNLTNLDLTTPDTFDSNYYSNLQLQNGLLQSDQELFSTSGADTISIVNSFNSNQTLFFENFKASMIKMGNIGVLTGSQGEIRTQCNFVNGNSSGLTTPITKETSEDDMISSI* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1953 726 PRINTS Haem peroxidase superfamily signature 433 447 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Haem peroxidase superfamily signature 495 512 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Haem peroxidase superfamily signature 513 525 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Haem peroxidase superfamily signature 561 576 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Haem peroxidase superfamily signature 621 636 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 CDD secretory_peroxidase 401 702 IPR033905 GO:0004601|GO:0042744
Apr1g1953 726 ProSiteProfiles Plant heme peroxidase family profile. 401 703 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 Pfam Peroxidase 45 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 Pfam Peroxidase 418 666 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 SUPERFAMILY Heme-dependent peroxidases 28 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PANTHER PEROXIDASE 8 338 - -
Apr1g1953 726 PANTHER PEROXIDASE 380 711 - -
Apr1g1953 726 PANTHER PEROXIDASE 72-RELATED 380 711 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PANTHER PEROXIDASE 72-RELATED 8 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 411 430 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 435 455 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 475 488 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 494 504 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 513 528 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 560 572 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 619 634 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 635 652 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 PRINTS Plant peroxidase signature 677 690 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1953 726 ProSitePatterns Peroxidases proximal heme-ligand signature. 561 571 IPR019793 -
Apr1g1953 726 Gene3D - 406 703 - -
Apr1g1953 726 Gene3D - 33 330 - -
Apr1g1953 726 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Apr1g1953 726 Gene3D Peroxidase, domain 2 166 309 - -
Apr1g1953 726 Gene3D Peroxidase, domain 2 539 682 - -
Apr1g1953 726 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601|GO:0042744
Apr1g1953 726 SUPERFAMILY Heme-dependent peroxidases 401 703 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1953 Apr-Chr1 29059921 29073778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1953 387 707 Peroxidase AT5G06730 62.305 2.54e-136 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1953 K00430 - aprc:113852209 929.472