Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1950 ATGGGTTCCATGCGTCTTGTAGTAGTGGCAGTGTGGTGTGTGGTTGCGATGCATGGAGGGTTTTCAGTCTCATATGCTCAGCTAAGTCCAAAGTTCTACGATGAAACATGTCCACAACTCAAAAATATTGTGTTTGGAGTCATTCTCAGAGCTTCCTTCTCCGATCCCCGTATAGGTGCCAGCCTCATCAGGCTTCATTTTCATGATTGCTTTGTTCAAGGTTGTGATGGATCAGTTTTGTTGAACAACACTGCAACAATAGAAAGCGAGCAAGATGCAGTTCCAAACAAAAACTCAATAAGGGGTTTGAATGTTGTCAATGACATTAAAACAATGGTGGAAGCTTTTTGTCCAGCCACAGTTTCTTGTGCTGATATTCTTGCTATTGCAGCTGAAGTAGCTTCTGTTCTGGGTGGAGGTCCATCATGGCCAATTCCATTGGGAAGAAGGGACAGCTTAACAGCAAATCTAACCCTTGCAAATCAAAATCTTCCAGCACCTTTCTTCACACTTGATCAACTAAAAGCTTCCTTTGCTGTTCAAGGTCTCAATACAATTGATTTAGTTACACTCTCAGGTGCTCATACATTTGGAAGAGCTCACTGTAGTACATTCATTAACCGATTGTACAATTTCAACAACACTGGAATTCCTGATCCAACTTTGAACACAACTTACTTAGAAATATTGCGTGAGATATGCCCCCAGAATGGAACTGGGAATAACATTACTAATTTGGACCCTACCACACCTAATGGATTTGATAACCACTACTACTCCAATCTTCAGCAACTCAATGGCTTACTTCAAAGTGATCAAGAGCTATTCTCCACTCCTAATGCGGATACCACTGACATTGTAAATAGCTTCAGTAGTGACCAAAATCTCTTCTTTGAAAACTTTAGCGTGTCAATCATAAAAATGGGCAAAATTGGAGTGCTAACGGGAGATGAAGGAGAAATTCGGTTACAGTGTAATTTTGTGAATGGTGACTCTACTGGATTAGCTGGTCTTGCATCCAAAGATTCAAAAGACGTTTTGGTTAAATTAACGTTCTTATCATCCACGCAGCGCGAGTCACTTGTCTATATAAATGGTGGATATCTTGCAAGAGCTCTCTGCACACAGTTTTTGGTATCTATATCAGTAAGAAAAATGAGGTGTTTGAATCTCTCGGTGACGGTTCTGTGCTGTGTTGTTGTGCTTGGAGGGTTACCCTTCTCCTCAGATGCACAATTAGATCCATCGTTTTACAAGAATACTTGTCCTAAAGTTCATTCCATTGTGCGTGAAGTCATCAGGGAAGTTTCAAAGAAAGATCCTCGTATGCTTGCTAGTCTCGTCAGGCTTCACTTTCATGACTGCTTTGTTCAAGGCTGTGATGCATCAATTTTGTTGAACAACACTGCCACTATAGAAAGCGAACAACAAGCTCTTCCAAACAACAACTCCATAAGAGGTTTGGATGTTGTGAATCAGATAAAGACTGCGGTGGAAAATGCTTGTCCGGGCGTAGTTTCTTGTGCTGATATTCTTGCCCTTGCAGCTGAAATATCTTCTGTTTTGGCTCATGGTCCTGATTGGAAAGTTCCATTGGGAAGAAGGGATAGTTTAACAGCAAACAGAACCCTGGCTAATATAAACCTTCCAGCACCTTTCTTTAACCTAACTCAACTCAAAAACGCTTTCACTGCTCAGGGCCTCAGCACCACTGATCTAGTTGCACTCTCAGGTGCTCATACATTTGGGAGAGCCCATTGCTCTTTATTCATCAGTAGATTGTACAACTTCAGCGGCACTGGCAAACCTGATCCAACTCTTGACACAACTTACTTGCAACAACTGCGCCAAATATGCCCCAATGGTGGACCAGATAACCTTGCCAATTTTGACCCAACAACTCCTGATACAATAGACAAAAACTACTACTCCAATCTTCAGGGTCACAAGGGTTTGCTTCAGAGTGATCAAGAGTTGTTCTCAACACCCGGTGCTGATACCATTAGCATTGTCAACAGTTTCAGTAGTGACCAAAATGTTTTCTTTGACAACTTTAAGGCTTCAATGATAAAGATGGGTAACATTGGCGTGCTAACGGGGAACAAAGGAGAAATCCGAAAACAGTGCAATTTTGTTAACAAGAAATCAGTTGATATTGCTAGTGTGGCCTCCCAAGAGTCATCTTCAGAGGAGGGTATGGTTAGCTCAATCTAA 2214 0.4164 MGSMRLVVVAVWCVVAMHGGFSVSYAQLSPKFYDETCPQLKNIVFGVILRASFSDPRIGASLIRLHFHDCFVQGCDGSVLLNNTATIESEQDAVPNKNSIRGLNVVNDIKTMVEAFCPATVSCADILAIAAEVASVLGGGPSWPIPLGRRDSLTANLTLANQNLPAPFFTLDQLKASFAVQGLNTIDLVTLSGAHTFGRAHCSTFINRLYNFNNTGIPDPTLNTTYLEILREICPQNGTGNNITNLDPTTPNGFDNHYYSNLQQLNGLLQSDQELFSTPNADTTDIVNSFSSDQNLFFENFSVSIIKMGKIGVLTGDEGEIRLQCNFVNGDSTGLAGLASKDSKDVLVKLTFLSSTQRESLVYINGGYLARALCTQFLVSISVRKMRCLNLSVTVLCCVVVLGGLPFSSDAQLDPSFYKNTCPKVHSIVREVIREVSKKDPRMLASLVRLHFHDCFVQGCDASILLNNTATIESEQQALPNNNSIRGLDVVNQIKTAVENACPGVVSCADILALAAEISSVLAHGPDWKVPLGRRDSLTANRTLANINLPAPFFNLTQLKNAFTAQGLSTTDLVALSGAHTFGRAHCSLFISRLYNFSGTGKPDPTLDTTYLQQLRQICPNGGPDNLANFDPTTPDTIDKNYYSNLQGHKGLLQSDQELFSTPGADTISIVNSFSSDQNVFFDNFKASMIKMGNIGVLTGNKGEIRKQCNFVNKKSVDIASVASQESSSEEGMVSSI* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1950 737 ProSitePatterns Peroxidases proximal heme-ligand signature. 572 582 IPR019793 -
Apr1g1950 737 Gene3D Peroxidase, domain 2 165 308 - -
Apr1g1950 737 Gene3D Peroxidase, domain 2 550 692 - -
Apr1g1950 737 PANTHER PEROXIDASE 72-RELATED 7 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PANTHER PEROXIDASE 72-RELATED 393 722 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 CDD secretory_peroxidase 412 712 IPR033905 GO:0004601|GO:0042744
Apr1g1950 737 SUPERFAMILY Heme-dependent peroxidases 412 713 IPR010255 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 CDD secretory_peroxidase 27 328 IPR033905 GO:0004601|GO:0042744
Apr1g1950 737 ProSiteProfiles Plant heme peroxidase family profile. 412 713 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PANTHER PEROXIDASE FAMILY PROTEIN 393 722 - -
Apr1g1950 737 PANTHER PEROXIDASE FAMILY PROTEIN 7 338 - -
Apr1g1950 737 Pfam Peroxidase 53 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 Pfam Peroxidase 429 676 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Apr1g1950 737 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 Gene3D - 417 713 - -
Apr1g1950 737 Gene3D - 32 329 - -
Apr1g1950 737 SUPERFAMILY Heme-dependent peroxidases 27 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Apr1g1950 737 PRINTS Plant peroxidase signature 422 441 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 446 466 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 486 499 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 505 515 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 524 539 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 571 583 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 629 644 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 645 662 IPR000823 GO:0004601|GO:0006979|GO:0020037
Apr1g1950 737 PRINTS Plant peroxidase signature 687 700 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1950 Apr-Chr1 29025518 29036836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1950 395 713 Peroxidase AT5G06720 57.812 1.33e-127 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1950 K00430 - aprc:113852209 1424.07