Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1949 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTTGAGGGCGGCCTCGACGCCCCTCCCGCCTCCACCGTCGTCGCCGCCTCCGCCGCTGGACCCCTCGTCCAACACGACTCCTCCGCCGCAGCTTCTGCTGTTGCTAACGGAGGCGCAGCAGCTCCCTCCCCTGCTGACCCCGCCGCCGGCAACGTCCCCGGACGGCGGAGCTTCCGGCAGACGGTGTGCCGTCACTGGCTTCGCAGCCTCTGCATGAAAGGCGACGCGTGCGGGTTCTTGCACCAGTACGACAAAGCGCGGATGCCGGTGTGCCGGTTTTTCAGACTCTATGGAGAGTGCCGAGAACAGGATTGCGTGTATAAGCACACTAATGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGTCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAATTATAACGCCTCTAATAAATTTTTCCAACAAAGGGGTGCTAGCTATACTCAACAAGTTGAAAAATCCCAGCTTCCTCAAGGAATTAATTCTACTAACCAAGCTGTGGCTGGGAAAACATTACCAGCAGAGTCAGGAAATGCCCAGCAGCAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAACCAAGTGCAAAGTGTTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGGGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATACTAATTTTCTCAGTCAACCGAACTCGACATTTCCAGGGATGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTACTGGTGGGAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGGAATTTCTCTGTTAAGTGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTGCCAGTGAAGATAAGCAGAGATTGTCAGGAGCTGGAGCCATCCATTGGAGAGCAGCTGGCATCCTTGCTATATCTTGAGCCGGATAGTGAGCTTATGGCTATCTCAGTTGCAGCAGAGTCTAAACGGGAAGAAGAGAAAGCAAAAGGAGTGAATCCAGATAATGGAGCGGAAAATCCAGACATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAGGAAAGTGATGAAGAGGAGGAGAGTTTTGGTCATGGTGTAGGGCCAGCGGGTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCGCCTCATATGCCCCTTGGGCGTGGAGCTAGACCCATCCCTGGAATGCAAGGTTTTAACCCCGTAATGATGGGTGATGGGTTATCCTATGGACCTGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTCGGTGTGGGTCCCCGAGCTTTTGCTCCGTATGGTCCTAGGTTCTCTGGTGATTTTGCAGGGCCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCTCAACCTGGGATGTTTCCAGGAGGTGGGTTTGGGATGATGATGAATCCTGGACGTGCTCCCTTTATGGGGGGGATGGGGGTTGCTGGTGCAAATCCACCAAGAGCTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCTCTACCTCAGAATGCAAACCGCGTTGCCAAACGAGATCAAAGAACTAATGATCGGAATGATAGGTATGGTCCAGGATCAGAGCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGGACCTGATGATGACATGCAGTATCAGCAAGGATACAAAGCAAACCAGGATGATCAGTATCCTGCTGTGAACAACTTCAGGAATGACGATAGTGAAAGTGAGGATGAAGCGCCCAGACGGTCAAGACATGGGGAGGGGAAAAAGAAAAGGCGAGGCGTAGAAGATGTTAACACAAGCTCTAATCATTAG 2097 0.4936 MEDSEGVLSFDFEGGLDAPPASTVVAASAAGPLVQHDSSAAASAVANGGAAAPSPADPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNASNKFFQQRGASYTQQVEKSQLPQGINSTNQAVAGKTLPAESGNAQQQQQVQQSQQQVSQNQVQSVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVTGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGAENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGANPPRAGRPVNMPPMFPPPPPLPQNANRVAKRDQRTNDRNDRYGPGSEQGKSQDMLSQSGGPDDDMQYQQGYKANQDDQYPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGVEDVNTSSNH* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1949 698 MobiDBLite consensus disorder prediction 408 472 - -
Apr1g1949 698 Gene3D ph1033 like domains 236 396 - -
Apr1g1949 698 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
Apr1g1949 698 MobiDBLite consensus disorder prediction 45 64 - -
Apr1g1949 698 Gene3D - 64 125 - -
Apr1g1949 698 MobiDBLite consensus disorder prediction 583 601 - -
Apr1g1949 698 ProSiteProfiles YTH domain profile. 258 393 IPR007275 GO:0003723
Apr1g1949 698 MobiDBLite consensus disorder prediction 664 692 - -
Apr1g1949 698 MobiDBLite consensus disorder prediction 432 450 - -
Apr1g1949 698 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 694 IPR045168 -
Apr1g1949 698 Pfam YT521-B-like domain 258 392 IPR007275 GO:0003723
Apr1g1949 698 MobiDBLite consensus disorder prediction 211 252 - -
Apr1g1949 698 Coils Coil 216 236 - -
Apr1g1949 698 SUPERFAMILY CCCH zinc finger 68 99 IPR036855 GO:0046872
Apr1g1949 698 MobiDBLite consensus disorder prediction 622 663 - -
Apr1g1949 698 MobiDBLite consensus disorder prediction 575 698 - -
Apr1g1949 698 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 694 - -
Apr1g1949 698 ProSiteProfiles Zinc finger C3H1-type profile. 68 95 IPR000571 GO:0046872
Apr1g1949 698 SMART c3hfinal6 68 94 IPR000571 GO:0046872
Apr1g1949 698 SMART c3hfinal6 124 148 IPR000571 GO:0046872
Apr1g1949 698 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Apr1g1949 698 MobiDBLite consensus disorder prediction 607 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1949 Apr-Chr1 29007688 29018918 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr1g1949 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1949 K14404 - gmx:100802826 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1949 1 29007688 29018918 Apr1g1949 1 29007688 29018918 ECH