Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1931 ATGGCTCATTCAGCTGAACCCTCATCATCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGTTCAGTTAGTCACAATATGTGCTCTTCAAATGGCTCTGATCCTGGACCTAACCTTGAGGTTATCAGTTTGAGTAGGCTTAGCTCCAACTTGGAGCAGCTTTTGATTGATTCTGATTGTGATTATAGTGATGCCGACATCATTGTGGAAGGAAATGAGGTCGGTGTTCATCGATGTATTCTGGCCTCTAGGAGTAAGTTTTTCCATGAATTGTTCAAGAGGAAGGAAGGATCATCAGAAAAAGAAGGAAAATTGAAGTATTGCATGAGTGATTTGTTGCCTTATGGCAATGTTGGATATGAGGCCTTCCTCATATTCCTGGGCTATATATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCAACATGTGTTGACAATGTGTGTGCCCATGATGCTTGTAGACCTGCAATTAACTTCGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAGTACCAGAGTTGGTATCCCTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAAGCTCTTGTGGAAGATGTCATCCCAATCATCACAGTTGCATTCCATTGTCAATTGAGTCAACTTGTTGCTCAATGTACTGACAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGAGAAAGAGCTTCCCCATGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCCCAATCCTCTGCAAGAAGTTGAAAATGATGCTTCTGTAGAGGATGCTTTGTCTCAAAAACGAATCACTAGAATACACAAGGCATTGGACTCCGATGATGTTGAGCTTGTTAAACTTCTTTTGAATGAGTCAAATGTTACTTTAGATGAAGCCAATGCTCTCCATTATGCAGCAGCATACTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGCTTGGGTTTGGCTAATGTCAATCTTCGAAATTCTCGTGGGTACACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCCATTATAGTATCCCTTCTTACCAAAGGCGCTTGTGCATCAGATGTGACTTTTGATGGTCGGAGTCCTGTTAGTATTTGTAGGAGGTTAACAAGGCCAAAGGATTATCATGCAAAAACAGAACAGGGGAAAGAAACTAACAAAGATAGGATATGCATTGATGTTCTTGAAAGAGAATTGCGTAGGAATCCAATGGCTGGGGATGCCTGTATGTCTTCCCAAACCATGGCTGAGGATCTCCACATGAAGCTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACCACATCAGAGTTTGCTGGTCTTTCTGCATTAAAAGGTTCAAATGGCAACTTAAGGGAGGTTGATCTTAATGAGACTCCCTTAGTGCAAAATAAAAGACTTCTTTCTAGGATGGAAGCCCTTATGAAAACGGTGGACATGGGGCGGCGGTACTTTCCTCATTGCTCAGAAGTGCTGGATAAGTTCATGGAGGATGATCTGCCTGATTTGTTCTACCTTGAGAAGGGGACACAAGAAGAGCAGAGAATCAAAAGGATGCGTTTCATGGAGCTTAAAGATGATGTCCACAAAGCTTTCAGTAAGGACAAGGCTGAGTTTAGCCGCACTGTCATCTCTTCTTCTTCATCCTCATCATCCCTCAGAGATTCTGTACATTACAAGTCTAGAAAACTGTAA 1764 0.4257 MAHSAEPSSSLSFTSSSHLSNGSVSHNMCSSNGSDPGPNLEVISLSRLSSNLEQLLIDSDCDYSDADIIVEGNEVGVHRCILASRSKFFHELFKRKEGSSEKEGKLKYCMSDLLPYGNVGYEAFLIFLGYIYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQVPELVSLFQRRLLNFVGKALVEDVIPIITVAFHCQLSQLVAQCTDRVARSDLDQISIEKELPHELSEKVKLLRPNPLQEVENDASVEDALSQKRITRIHKALDSDDVELVKLLLNESNVTLDEANALHYAAAYCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDVTFDGRSPVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLERELRRNPMAGDACMSSQTMAEDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSALKGSNGNLREVDLNETPLVQNKRLLSRMEALMKTVDMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRMRFMELKDDVHKAFSKDKAEFSRTVISSSSSSSSLRDSVHYKSRKL* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1931 587 PANTHER REGULATORY PROTEIN NPR3 10 575 IPR044292 GO:0009862|GO:2000022|GO:2000031
Apr1g1931 587 SUPERFAMILY Ankyrin repeat 264 373 IPR036770 -
Apr1g1931 587 Pfam NPR1/NIM1 like defence protein C terminal 372 574 IPR021094 -
Apr1g1931 587 SMART ANK_2a 330 362 IPR002110 GO:0005515
Apr1g1931 587 SMART ANK_2a 296 326 IPR002110 GO:0005515
Apr1g1931 587 SMART ANK_2a 267 295 IPR002110 GO:0005515
Apr1g1931 587 Pfam BTB/POZ domain 62 151 IPR000210 GO:0005515
Apr1g1931 587 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Apr1g1931 587 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Apr1g1931 587 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Apr1g1931 587 PANTHER REGULATORY PROTEIN NPR3 10 575 - -
Apr1g1931 587 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Apr1g1931 587 CDD BTB_POZ_NPR_plant 47 190 - -
Apr1g1931 587 SUPERFAMILY POZ domain 49 188 IPR011333 -
Apr1g1931 587 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Apr1g1931 587 SMART BTB_4 64 190 IPR000210 GO:0005515
Apr1g1931 587 Gene3D - 263 404 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1931 Apr-Chr1 28853527 28860473 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr1g1931 NPR1_like_C 1.9e-95 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1931 K14508 - gmx:100217338 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1931 1 28853527 28860473 Apr1g1931 1 28853527 28860473 ECH