Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1928 ATGGAAACCAGAGACCGTGGCCGAGAGCAACCAGGCGGTTACGGCGGAAGAGGAACTCGGCAACCACCGGAGGAGCCGACTCTGCAACCAGAATGGCGTCGTGCTGGAGAAAGACAGCAGGAGCTGATTCTGCAACCGGAATGGCGACGACGGAGGCCGAGCGGTTCTCCCTCCGAGTCTTCTAATCGCGGAAGTGAGGAAGAGATTCTTCTCCAACCAGAATGGAGGCGCTCCAAGCCAAATGCGACTGCGAGTGGTAGCGTCTGGGAACCAGAATGGAGGCGATCGAGGCCAACTGCAACTGCATTTCCGTGGAACCAAAACTATGGCGTTCAAAAACAAGGAGGAACGAGTTCCGGTGGTGTTGAAAAAGGTAGAGATGCTAATGACTCTTGGCGACCAGCTTCAGGTATATTCACTGTTCAACTATCAATTTTCCTTGCAGATTCTGTAGTTTCCAAACTGGAAGGACTACAAATATCAAAACAGTTAGTTGTATCTTCTTGTGCCCTTGAAAAAAAGGATAGAATTTCACCTATTCGGAGACCTGATAATGGTGGCACGTTAGCCATTCTGATGAGCAGACTTCGTGTCAATCATTTTCCTGTTAACTTCAATCCAGAGAGTATAATAATGCATTATAATGTTGATGTCAAACCAAAGTTTATATCAAAATTTGGCCAGCCTCAGAAATTATCGAAGTCTGATCTGTCCATGATCAGAGAGAAACTGTTTTCTGATGATCCGGAAAGGTTGCCCTTGGAAATGACCGCACATGATGGTGCAAAAAATATTTTTAGTGCAGTACAATTACCAGAAGAGACCTTTACTGTGGATATCTCGGATGGAGAGGATGAAAAGACCCTTTCATATAGTGTTAGCTTAACACTTGTTAATAAACTCAGGCTTCGCAAGTTAATGGACTATCTAAATGGGCATACTTTCTCCATTCCTAGGGATATTTTACAAGGGATGGATGTGATGGTGAAAGAGAATCCAGCTAGACGCACTGTTTCTGTGGGACGGCACTTCTATCCCACAAATCCTCCTTTGGTGGCAAAAGATCTTCACCACGGGATAATTGCCGTTGGGGGGTTTCAGCATAGTTTAAAACCTACGTCTCAGGGTCTGTCCTTGTGTGTAGACTACTCAGTGTTGGCTTTCCGAAAACGAATGTCAGTCTTGGATTTTTTGCATGACCGTATTGATAACTTTAAATTGGATGAATTTGAAAACTTCAGGAAATATGTTGAAGAGGCACTTATTGGATTGAAAGTTAATGTGACTCATCGTAAATCCAAAAATAAATACATTATTTCAAGATTAACACCTATGATCACAAGGTATGTCACTTTTCCTATTGACAATACCGATGGCTGGAGACCCTCTAAGGATGTTAGTCTTCTTAGTTTTTTTAAAGATAAATATGGAAAGGACATCATGTACAAAGATATTCCTTGTCTAGATTTAGGGAAGGACAACAAGAAGAACTATGTACCCATGGAATTCTGTGTTTTGGTTGAGGGCCAAAGATATCCCAAAGAACGTCTAGATGGTGTGGCTGCAAAGACATTGAAAGCAATGTCACTAGCTCACCCAAATGAGAGGGAATGTGTGATACAGAAGATGGTGCAGTCTAGTGATGGACCTTGTGGTGGTGATCTTATTCAAAATTTTGGAATGATTGTCAACACAAACATGACAACCATTATAGGACGTGTAATTGGCCCTCCAGAATTGAAGTTAGGTGATCCAAATGGAAAGATTATCAAAACAACAGTGGATATGGAGAAATGTCACTGGAACCTTGCTGGAAGATCAATGGTGGAAGGAAAACCAATTGAGAATTGGGCCATTCTTGATTTCACTAGTTTTGGTCCGTTCAAGTACAAATTAAGAGCCAAGGAATTCATTCAAAAGTTTATTGGTAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCAAATTATGATTTACTATTTGAATTACTTGTAAAAATTAACAACATTTGTAAATATAACCAAGGTCACCTGCAATTTCTTCTCTGTGTAATGGCTAAAAAAAGTACTGGGTACAAGTACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTGACTCAATGTTGCTTGTCTAATAGTGCTAATGAAGGGGAGGACAAATTTTATTCTAATCTGGCTCTCAAGATTAATGCCAAACTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTTACTTTGAGAGTGAAGGGCATGTTATGTTTGTAGGGGCTGACGTCAATCATCCTGGTTCTCGGGACACCAGGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTCCCCACAATATAATCGAAGTGAGAAAATATTGAACTTTGGGGAGGTTTGTCTTGAGCTTGTTGCATGTTACAAGAGGATGAATGGAGTCAGGCCAGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGAAGAGCTTCTAGATTTGAAGAGAGCATTCCAAAGATTGAATTACTTTCCAACAGTCACTCTTATTGTAGCACAAAAACGACATCAAACTCGTTTGTTTCCAGAGGGTTGGAGGGATGGATCTTCCAGTGGCAATATTTTGCCAGGAACAGTTGTGGACACAAAAGTTACACACCCGTTTGAGTTTGATTTTTACCTTTGTAGTTACTATGGAAGTCTAGGTACAAGCAAGCCCACTCATTACCATGTCTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATATGATATGTGCTTCACCTTTGCCAGGTGCACTAAACCTGTATCTTTAGTTCCTCCAGTGTACTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCTGAAGTCAGCAGCATCTGCATCTTCTACGGATGCTTCATCAGTTTCACAAACAGCTTCATTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 3114 0.4136 METRDRGREQPGGYGGRGTRQPPEEPTLQPEWRRAGERQQELILQPEWRRRRPSGSPSESSNRGSEEEILLQPEWRRSKPNATASGSVWEPEWRRSRPTATAFPWNQNYGVQKQGGTSSGGVEKGRDANDSWRPASGIFTVQLSIFLADSVVSKLEGLQISKQLVVSSCALEKKDRISPIRRPDNGGTLAILMSRLRVNHFPVNFNPESIIMHYNVDVKPKFISKFGQPQKLSKSDLSMIREKLFSDDPERLPLEMTAHDGAKNIFSAVQLPEETFTVDISDGEDEKTLSYSVSLTLVNKLRLRKLMDYLNGHTFSIPRDILQGMDVMVKENPARRTVSVGRHFYPTNPPLVAKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKRMSVLDFLHDRIDNFKLDEFENFRKYVEEALIGLKVNVTHRKSKNKYIISRLTPMITRYVTFPIDNTDGWRPSKDVSLLSFFKDKYGKDIMYKDIPCLDLGKDNKKNYVPMEFCVLVEGQRYPKERLDGVAAKTLKAMSLAHPNERECVIQKMVQSSDGPCGGDLIQNFGMIVNTNMTTIIGRVIGPPELKLGDPNGKIIKTTVDMEKCHWNLAGRSMVEGKPIENWAILDFTSFGPFKYKLRAKEFIQKFIGKYKKLGIYMQEPIWYEESSMKILANYDLLFELLVKINNICKYNQGHLQFLLCVMAKKSTGYKYLKWISETKVGIVTQCCLSNSANEGEDKFYSNLALKINAKLGGSNVELSNRLPYFESEGHVMFVGADVNHPGSRDTRSPSIAAVVATVNWPAANRYAARVSPQYNRSEKILNFGEVCLELVACYKRMNGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKRAFQRLNYFPTVTLIVAQKRHQTRLFPEGWRDGSSSGNILPGTVVDTKVTHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSLKSAASASSTDASSVSQTASFEQGFYRLHADLENIMFFI* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1928 1037 MobiDBLite consensus disorder prediction 1 126 - -
Apr1g1928 1037 ProSiteProfiles Piwi domain profile. 692 991 IPR003165 GO:0003676
Apr1g1928 1037 Gene3D - 760 1037 IPR036397 GO:0003676
Apr1g1928 1037 SUPERFAMILY PAZ domain 387 546 IPR036085 GO:0005515
Apr1g1928 1037 MobiDBLite consensus disorder prediction 100 119 - -
Apr1g1928 1037 CDD PAZ_argonaute_like 392 507 - -
Apr1g1928 1037 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 67 1036 - -
Apr1g1928 1037 Gene3D - 574 755 - -
Apr1g1928 1037 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 67 1036 - -
Apr1g1928 1037 MobiDBLite consensus disorder prediction 30 56 - -
Apr1g1928 1037 Pfam N-terminal domain of argonaute 195 328 IPR032474 -
Apr1g1928 1037 Pfam PAZ domain 408 521 IPR003100 GO:0005515
Apr1g1928 1037 Pfam Argonaute linker 1 domain 339 390 IPR014811 -
Apr1g1928 1037 SMART DUF1785_2 338 391 IPR014811 -
Apr1g1928 1037 ProSiteProfiles PAZ domain profile. 392 508 IPR003100 GO:0005515
Apr1g1928 1037 SMART Piwi_a_2 692 990 IPR003165 GO:0003676
Apr1g1928 1037 Pfam Piwi domain 693 987 IPR003165 GO:0003676
Apr1g1928 1037 SUPERFAMILY Ribonuclease H-like 684 991 IPR012337 -
Apr1g1928 1037 CDD Piwi_ago-like 556 989 IPR045246 -
Apr1g1928 1037 Gene3D paz domain 386 512 - -
Apr1g1928 1037 SMART PAZ_2_a_3 392 534 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1928 Apr-Chr1 28833099 28837527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1928 196 991 Eukaryotic Initiation Factors Gene Family AT1G48410 36.277 2.15e-146 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1928 K11593 - gmx:100783571 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1928 1 28833099 28837527 Apr1g1928 1 28833099 28837527 ECH