Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1926 ATGGAGGATCAGGCTTTAGTTGTTGCAGAATCTGATAATGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAGGAAGAAGATGAAGAAGTGTGGAAAGAAACTGAGGAGCCTGTGGTGGAAGAGTTGAAGGATGAGCTTGATGAATTTTCAGTAAAAATGTTCTTTAAGGGGTTGTCAATGGCTGGGGTTGATAAATCAAGTTCTGGGTTTTCTGGAATTGGCGTGTTCATGGAAAGGTCGTCAGGTCTTGCTGCTATACGGGTGCAGAAAAGGCTTGATTTTTATGCTGAGGAGTCAGTAGTTGACTATTTGGCACTCTTGGATGGCTTGCTGGAAGCTGAGCAGAACAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAATTGTTGTATGATCAGATTACATTTGAGAAAGATTTGGAGACGCCACTTTTAATGGGACTGAGAGAAAGGATTCTGGAACTTGCCCATAGTTTTGAAGCTTTTGTTTTGAAGTTTATACCGAGCACTGATCTTGAGCAGCCACTCCAGTTGGCCAAAGTGGCTATTGGACTTGTCACTTTCCCTGTAAATGGTGAGAGATTATTTAAGAACTGTTCTATTTGCTGGGATGACAAGCCAGTGCCAATTATGGTTACTTTGAAATGTTCACACACATTCTGTTCACATTGCTTGAAGGCCTATGCTGATGGTAAAATACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGCATTGCATCTCTGCAACTGAGTGCCGGTCTTTTCTTACATTTAACTCCTTTGAATCAATGGAGAAAGCCCTTTCAGAAGCAAATATTATCCATTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTTGTCAGCTAGAGCCAGTTCATCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGCATGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGCTGTGTAGAATACCAGAGTCTGCCAGAGGAGGAGAGAGATGCTTCTGATATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGCCGTAGAATGATTGAGCTTACTCAAGGTTGTTACCACATGACATGCTGGTGCGGTCACGAGTTCTGCTATTCTTGTGGTGCGGAATATAGGGATGGTCAACAGACATGTCAGTGTGCATTTTGGGATGAAGACCGCTCTGAAGACTCCGTGACGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCTCCATGATCATGGATGCATACTCAGACCAAGAAAGATCGCAGCTTGCGCTTATTCAAAGGTTCCTAGCTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCTGTACAGAAACTTACGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1554 0.4273 MEDQALVVAESDNVGREEEEDEFCSCCEEEDEEVWKETEEPVVEELKDELDEFSVKMFFKGLSMAGVDKSSSGFSGIGVFMERSSGLAAIRVQKRLDFYAEESVVDYLALLDGLLEAEQNKIRRVYAFTDSELLYDQITFEKDLETPLLMGLRERILELAHSFEAFVLKFIPSTDLEQPLQLAKVAIGLVTFPVNGERLFKNCSICWDDKPVPIMVTLKCSHTFCSHCLKAYADGKIQSCQVPIRCPQPGCKHCISATECRSFLTFNSFESMEKALSEANIIHSDRIYCPFPNCSVLLDPHECLSARASSSSQSDNSCIECPVCKRFICMDCKVPWHSSMSCVEYQSLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCAFWDEDRSEDSVTHSLQESEQWAWETFNSLSMIMDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTETYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1926 517 SUPERFAMILY RING/U-box 201 279 - -
Apr1g1926 517 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 18 516 - -
Apr1g1926 517 ProSiteProfiles TRIAD supradomain profile. 199 417 IPR044066 -
Apr1g1926 517 SUPERFAMILY RING/U-box 355 419 - -
Apr1g1926 517 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Apr1g1926 517 Pfam IBR domain, a half RING-finger domain 362 411 IPR002867 -
Apr1g1926 517 Pfam IBR domain, a half RING-finger domain 281 342 IPR002867 -
Apr1g1926 517 Gene3D - 340 465 - -
Apr1g1926 517 Pfam Reverse transcriptase-like 69 173 IPR002156 GO:0003676|GO:0004523
Apr1g1926 517 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 516 IPR031127 GO:0004842|GO:0016567
Apr1g1926 517 SMART ibrneu5 271 342 IPR002867 -
Apr1g1926 517 SMART ibrneu5 352 411 IPR002867 -
Apr1g1926 517 Gene3D - 61 189 IPR036397 GO:0003676
Apr1g1926 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Apr1g1926 517 ProSiteProfiles Zinc finger RING-type profile. 203 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1926 Apr-Chr1 28818383 28823697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1926 32 402 C3H Transcription Factor Family AT2G19610 25.897 2.23e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1926 - - gmx:100783040 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1926 1 28818383 28823697 Apr1g1926 1 28818383 28823697 ECH