Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1921 ATGGAAGGGACCCCTCTCTGCTGTGAACAATTGCCAGATGGGGAATGCATAGAGGTTCAGAAAGACGAAGATGGTGCACTAATTGAATTAGATTGTCAAAATGGTTTTTCTGAAGGAAGAAAGGATTTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATATGATGACGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTAAGGGTGAAGAATTCATGGTTCAAGCGAAATAGCCGAGAAAAATATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAATAAAAGATGTTAACCATTTGAGAAAAGAGACAAGGACTGGTTGCCCTGCAATGATAAGGATGAGGTTAGTGGAGTCTCTAAGATGGAGGATACTTGAGGTTTCACTTGAACATAACCACATGTTAGGTGTTAAGATACACAAATCGGTTAAAAAGATGGGAACTGGAACTAAAAGGAAGTCATTGCCTAGTTCTGATGCTGAGGTGCAAACAATTAAGTTATACCGTGCACTTGTGATAGATGCAGGAGGTAATGGACATTCAAATTCTAGTGCAAGGGATGACAGAACTTTCTTTGAATCTTCTAATAAATTGAACCTTAAAAAAGGTGACACACAAGCTATTTATAATTTCTTCTGCCGGATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGATGATGGGCATTTGAGGAATGCATTCTGGGTTGATGCCAGGTCCAGGGCTGCATGTGGTTATTTTGGTGATGTTCTTTATTTCGATAACACTTATTTGTCAAACAAATATGAAATCCCTCTTGTGGCTTTTGTTGGGATAAATCACCATGGTCAATCAGTTTTATTAGGCTGTGGCCTGCTTGCAAGTGAAACAACAGAGTCTTACACGTGGTTGTTTAGGGCATGGGTTACATCCATGTCAGGATGTTCTCCCCAAACTATTATTACTGATAGGTGCAAGGCTTTGCGGAGTGCAATTGTAGAAGTTTTTCCTAGATCTAGCCATCGTTTTGGTTTGTCATTGATTATGAAAAAAGTACCAGAGAAATTGGGAGGGTTGCACAACTATGATGCAATCAGGAAAGCACTTATTAAAGCAATTTATGAGACATTGAAAGTGATTGAATTTGAAGCAGCATGGGGATTTATGATTCAACGCTTTGGAGTTAGTGACCATGAATGGCTTCATTCTCTATATGAAGATCGAGTTCATTGGGCACCAGTATATTTGAAGGACACATTTTTTGCTGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTAGTCCTTTTTTTGACAAGTACGTGCACAAACAGACTCCTCTTAAGGAGTTTCTTGATAAATATGAATTAGCTCTTCACAAGAAGTACAAGGAAGAATCTTTTGCAGATATTGAATCAAGGAGATCAAGTCCCTTGCTAAAAACCAGATGTTCTTTTGAATTGCAGCTCTCTAGAATATACACAAGAGAAATGTTCATGAAGTTTCAATTAGAAGTGGAAGAAATGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTCTGATTGAGGGAAACAGGCGGGAGATTAGGGATTTTGAAGTTCTGTACAGTAGGACAGCTGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATACCTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGTCTATACATTCCTGATCACAGCTCTGGTAGTACTGATGACAATGACCGCATTCAATGGTCTAATCAATTATTTAAAAGTGCCTTACAAGTTGTGGAGGAGGGGATAATTTCTCTAGACCATTACAATGTAGCGTTGCAGTCTATAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGAGAAATCATGTGAATCCTCTGGCCAGACCATGACGGACGATACCGTGTCTTCTCCGATCGATAAAGTCTTGTCACTGAGTCCTAATCTTGACATCGCGATAGATGATGGATCTCCAAACTGTGAGCAACTACTCGAAATTGATGGAAGTGAACATGAAAATGGGAGGGATGAAACAACAGTCATGGATAGTCATAGTGGAGAATCTCAAGGGAAAGACTACCCCCCACCAGTTGTTGGAATGGAGTTTGATACTTATGATGATGCCTACAACTATTACAACACCTATGCAAAGGAAATTGGATTTGCTATTCGGGTTAAATCTTCGTGGACCAAACGTAACAGCAAAGAGAAGCGTGGTGCTGTGCTTTGCTGCAACTGCGAGGGTTTCAAAACAATTAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAATAGGTGGAGGGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAGAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAATGGAGCCAAAAGAAAAGCTGAGCCAACTCTAGACGTTGAAGTCAAAACAATCAAGTTATATCGAATGCCAGTTGTAGATGCATCAGGTTATGGAAGCTCAAATTCTAATGAAGGAGGAACTAGTAACAACATTTATTGTTCCAGGCGTTTGAAACTAAAAAAACGTGATCCAGATCTTATATCAAATTACTTCTGCCGCAGTCAATTGATGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAACATATTTTGGGTTGATTCTAGATCTAGGGCTGCGTATAGTTATTTTGGTGATGTGGTTGCATTTGACTCAACATGTTTGTCAAATAATTATGAGATTCCACTTGTTGCGTTTGTTGGCATTAATCACCATGGGAAATCTGTTTTGCTAGGAAGTGGTCTGCTTGCCGATGAGGCATTTGAAACATATATTTGGTTATTTAGGGCTTGGCTTACTTGTATGTCTGGTCGCCCTCCACAAACTATTATTACAAACCAGTGTAAGGCTGTGCAAAATGCAATAGCTGAGGTTTTCCCCAGAGCTCACCATAGAATTTGTCTATCACAAGTCATGCAGAACATTCTTGGGTGTTTTGTACAGTTTCAGGAATATGAGGCGTTTCAGATGGCACTGACTAAAGTGATATATGACTCTAAAACAGTTGATGAATTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATAACGAAAAGCTCCAAAGCTTACATGAAGAACGAGAGCATTGGGCACCAGTGTACTCCAAGGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTTAAGGGTCACGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAAAAGAAGCGTAGAAATGAAGTTCTTGATGATTTTGAGTCATGCAATCAGAGCCCACTACTGAAGACAAGATGCTACTATGAGTTGCAGCTCTCTAAATTGTACACAAATGCAATATTCAGGAAATTCCAAGATGAGGTGGTGATGATGTCCTCTTGTCTCAGCGTCACGCAAACTGAAACAAATGGGTCTATAGTGACATACATGGTAAAGGAACGTCAAGGGGAAGAACCTGTAAGAGATTCTAGGCATTTTGAAGTAATGTATGATAAAGCTGGAGCAGAAGTTCGCTGCATTTGTAGTTGCTTTAACTTCAAAGGGTACCTATGCAGACATGCCTTGTATATCCTTAGTTATAATGGTATGGAGGAAATTCCATGTCAGTATATTTTGTCAAGATGGAGGAAGGATTTTAAGCGATTGTATGTACCTCATCTCAGCTCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTATAAACGTGCTATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAAGCATTCAAAGAGTCTTTGAATAAGATCCGCCTTGTAGCAGACAGACAAGATTGA 4101 0.3936 MEGTPLCCEQLPDGECIEVQKDEDGALIELDCQNGFSEGRKDFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESLRWRILEVSLEHNHMLGVKIHKSVKKMGTGTKRKSLPSSDAEVQTIKLYRALVIDAGGNGHSNSSARDDRTFFESSNKLNLKKGDTQAIYNFFCRMQLTNPNFFYLMDFNDDGHLRNAFWVDARSRAACGYFGDVLYFDNTYLSNKYEIPLVAFVGINHHGQSVLLGCGLLASETTESYTWLFRAWVTSMSGCSPQTIITDRCKALRSAIVEVFPRSSHRFGLSLIMKKVPEKLGGLHNYDAIRKALIKAIYETLKVIEFEAAWGFMIQRFGVSDHEWLHSLYEDRVHWAPVYLKDTFFAGMSAARPGESISPFFDKYVHKQTPLKEFLDKYELALHKKYKEESFADIESRRSSPLLKTRCSFELQLSRIYTREMFMKFQLEVEEMYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKRLYIPDHSSGSTDDNDRIQWSNQLFKSALQVVEEGIISLDHYNVALQSIEESLSKVHDVEQRQEKSCESSGQTMTDDTVSSPIDKVLSLSPNLDIAIDDGSPNCEQLLEIDGSEHENGRDETTVMDSHSGESQGKDYPPPVVGMEFDTYDDAYNYYNTYAKEIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDNGAKRKAEPTLDVEVKTIKLYRMPVVDASGYGSSNSNEGGTSNNIYCSRRLKLKKRDPDLISNYFCRSQLMNPNFFYVMDLNDDGQLRNIFWVDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGINHHGKSVLLGSGLLADEAFETYIWLFRAWLTCMSGRPPQTIITNQCKAVQNAIAEVFPRAHHRICLSQVMQNILGCFVQFQEYEAFQMALTKVIYDSKTVDEFERAWDDLTQHFGIRNNEKLQSLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKRRNEVLDDFESCNQSPLLKTRCYYELQLSKLYTNAIFRKFQDEVVMMSSCLSVTQTETNGSIVTYMVKERQGEEPVRDSRHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILSYNGMEEIPCQYILSRWRKDFKRLYVPHLSSDNVDISNPVQCFDHLYKRAMQVVEEGMISQDHYMVSWQAFKESLNKIRLVADRQD* 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1921 1366 MobiDBLite consensus disorder prediction 714 744 - -
Apr1g1921 1366 MobiDBLite consensus disorder prediction 838 863 - -
Apr1g1921 1366 SMART 26again6 1259 1286 IPR006564 GO:0008270
Apr1g1921 1366 SMART 26again6 560 587 IPR006564 GO:0008270
Apr1g1921 1366 MobiDBLite consensus disorder prediction 664 685 - -
Apr1g1921 1366 MobiDBLite consensus disorder prediction 714 729 - -
Apr1g1921 1366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 660 IPR031052 GO:0006355
Apr1g1921 1366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 700 1362 IPR031052 GO:0006355
Apr1g1921 1366 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Apr1g1921 1366 ProSiteProfiles Zinc finger SWIM-type profile. 1248 1284 IPR007527 GO:0008270
Apr1g1921 1366 MobiDBLite consensus disorder prediction 669 685 - -
Apr1g1921 1366 Pfam MULE transposase domain 262 356 IPR018289 -
Apr1g1921 1366 Pfam MULE transposase domain 962 1056 IPR018289 -
Apr1g1921 1366 Pfam SWIM zinc finger 539 581 IPR007527 GO:0008270
Apr1g1921 1366 Pfam SWIM zinc finger 1258 1277 IPR007527 GO:0008270
Apr1g1921 1366 Pfam FAR1 DNA-binding domain 757 841 IPR004330 -
Apr1g1921 1366 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Apr1g1921 1366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 20 660 - -
Apr1g1921 1366 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 700 1362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1921 Apr-Chr1 28746840 28755827 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr1g1921 MULE 2.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1921 K17604 - gmx:100796448 2505.71