Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1916 ATGGGTGTAAGAACACTAGTACAATTGGTGCTTTACTTCAATTACTTGTTGTTTGCAGCAGCACAAGAAGTTACCAATGATTTTATAGTCCTAAAGTCTCTGAGGGATTCATGGCCGAACACAATTCCTCGTTGGGTGGGTTCAGATTCTTGCAATGGTTGGGATGGCATTAAGTGCAAAAACTCACGTGTAATTTCCATATCATTACCAGACACTGGTTTGACTGGCCTGCTTTCTGGAGATATTGGATCACTCTCTGAATTGAAGATTCTGGATCTTTCATACAATAGAGGCCTAACAGGATCACTTCCACGAGAAATTGGAAACTTGAAGAAGCTATCAAAATTAATTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCATATGAAATAGGATTTCTCCAAGAGCTTGTTTTCTTATCTTTAAACTCCAACAATTTTGTTGGACCAATTCCACCTTCTATTGGGTATCTGTCAAACCTTACTTGGCTAGATTTAGCTGACAATCAGCTTGATGGATCCATCCCAGTATCTAGTGGCACTAGCCCAGGTCTTGATATGTTACTTAATACACAGCATTTTCATCTTGGGAAGAATAAGTTTTCAGGAGAAATTCCTCCTCAACTTTTTAGCTCGAAAATGACACTGATACATGTGATTTTTGAGAGCAATCAACTAGTTGGTGGTATTCCAGAAACACTTGGACTTGTTAAGAGTCTGATGGTGGTGCGCTTTGAAAATAATTCATTGGATGGATATGTACCTCAGAACTTCAACAACCTTACACTTGTTACCGACCTGTTGTTGTCCAACAATAAGCTGCGTGGTCCCCTGCCAAACCTTAATGGCATGAACTCCCTAAAATACTTGGATTTGAGCAACAATAGCTTTGATGAGTCAGAATTTCCACCGTGGCTTTCAAATGTGAAGAATTTAACAACACTACAAATGGAGAATGTGAACCTTTTTGGGAAAATTCCTGTTCCTTTATTCAGCCTTGCCTATTTACAAAATGTTGTGCTAAGAAACAACAACTTCAATGGAACCTTGGATATTGGAACCAACTACAGCAAACAGTTGAAACTAATTGATATGAAGTCAAACTCAATTCAAGACTTTATACAACGAAATGAACTCCCGAATATCACGATAATACTTGTGTCCAACCCGATTTGTACTGAAACAGAAGCTGAAGGGAGTTACTGCACCATGCACAATATCTTAGATAAAAAACTACAAGATCAGATTCTCAGTCCCAAGTGCATATGTGGATATCCATATACAGGAAATTTAAATTTTAGAGCACCTTCATATTTTGAATGGAGAAATAAAACACCCCAAGAGGAAGCCATTTTGCTTGCTTTTCAACTTTATCACCTACCTGTGGATTCAGTTTCTTTGATTTCGACTAAAGATCCATTTCATTATTTTGAGTTTACAATATATATTTTCCCATCAGGCCAATATCACTTCACCCCGCAAGACATTTCTAGTATAAGCTCTTTGCTTGGCAACCTAAGTGCTAATAATCCATATAATTTTGTTGCTGGAAACCAAGGTCAAGGACCTAAAGAGTCGAGTTACTCATCAAACACTGATATAATTATTGGAGCAGCAATTGGTGGTTCTTTTATCCTGCTTGTATTGTTAGTCCTTGCAAGTGTTTATGCTTTTCGCCAGAAGAAAAGGGCAGAAAGAGCAATTTCTAGAAGCAATCCATTTGGACGCTGGGATCCAAATAAAAGCAACTGTGACATTCCTCAGTTAAAAGCAGCTAAGCAGTTCTCTTTTAAAGAAATTAAGAAATACACAAACAACTTTTCACAAGCCAATGGTATTGGATCAGGGGGTTATGGAAAGGTTTATCAGGGAACTCTTCCCAATGGGCAACTGATAGCCATAAAACGAGCTCAAAAGGAATCAAAGCAGGGAGTGCTAGAATTCAAAGCTGAGATTGAACTACTTTCAAGGGTTCACCACAAGAATCTTGTTAGCCTTGTGGGATTCTGCTTTGAACGAGAAGAACAAATGCTGGTTTATGAGTTTGTTCCAAATGGAACTTTGAAGGATGCTATCTCAGGGAAATCTGGCATTGTATTGATCTGGAGTAGAAGGCTGAAGGTAGCCCTTGGTACTGCCCGGGGTTTGGCTTATCTTCATGAACATGCTGATCCACCTATTATACACAGGGACATCAAATCCAACAACATTTTGCTGGATGAGAACTATAATGCAAAAGTTGCTGATTTTGGCCTCTCCAAGTCAATCTTAGATGATGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCAGATTATTATACTAGTCAGAAGTTGACTGAAAAGAGTGATGTCTATAGTTTTGGAGTGCTAATGCTGGAGCTGATAACTGCAAGAAAGCCAATAGAACGAGGGAAATACATTGTAAAAGTGGTCAGGAATTCAATTGATAAGACAAAAGACTGGTATGGTCTTCACGAAATTATTGATCCAGCCATCTGGTCAGGATCAACAGTAAAGGGTTTTGAGAAGTTTGTGGACCTTGCAATGGAGTGTGTTAAAGAGTCAGGAACTGACAGGCCCACAATGAGTGATGTGGTTAAAGAAATTGAAGGCATGTTGCAATCTGTTGGCTTGAACCTAACATCTGAATCAATAGCATCCACTTCATCTAGTTATAGATATTATGAGATAAGTATGAGTTCTCATCAGGACAATCCTTACAGCAATGAGTCCTTTGGTTCAAGTGAAGAACATTTGCATCCAAAAAATGAGCCTACTTAA 2802 0.3858 MGVRTLVQLVLYFNYLLFAAAQEVTNDFIVLKSLRDSWPNTIPRWVGSDSCNGWDGIKCKNSRVISISLPDTGLTGLLSGDIGSLSELKILDLSYNRGLTGSLPREIGNLKKLSKLILVGCGFTGRIPYEIGFLQELVFLSLNSNNFVGPIPPSIGYLSNLTWLDLADNQLDGSIPVSSGTSPGLDMLLNTQHFHLGKNKFSGEIPPQLFSSKMTLIHVIFESNQLVGGIPETLGLVKSLMVVRFENNSLDGYVPQNFNNLTLVTDLLLSNNKLRGPLPNLNGMNSLKYLDLSNNSFDESEFPPWLSNVKNLTTLQMENVNLFGKIPVPLFSLAYLQNVVLRNNNFNGTLDIGTNYSKQLKLIDMKSNSIQDFIQRNELPNITIILVSNPICTETEAEGSYCTMHNILDKKLQDQILSPKCICGYPYTGNLNFRAPSYFEWRNKTPQEEAILLAFQLYHLPVDSVSLISTKDPFHYFEFTIYIFPSGQYHFTPQDISSISSLLGNLSANNPYNFVAGNQGQGPKESSYSSNTDIIIGAAIGGSFILLVLLVLASVYAFRQKKRAERAISRSNPFGRWDPNKSNCDIPQLKAAKQFSFKEIKKYTNNFSQANGIGSGGYGKVYQGTLPNGQLIAIKRAQKESKQGVLEFKAEIELLSRVHHKNLVSLVGFCFEREEQMLVYEFVPNGTLKDAISGKSGIVLIWSRRLKVALGTARGLAYLHEHADPPIIHRDIKSNNILLDENYNAKVADFGLSKSILDDEKDHVTTQVKGTMGYLDPDYYTSQKLTEKSDVYSFGVLMLELITARKPIERGKYIVKVVRNSIDKTKDWYGLHEIIDPAIWSGSTVKGFEKFVDLAMECVKESGTDRPTMSDVVKEIEGMLQSVGLNLTSESIASTSSSYRYYEISMSSHQDNPYSNESFGSSEEHLHPKNEPT* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1916 933 SUPERFAMILY Protein kinase-like (PK-like) 593 910 IPR011009 -
Apr1g1916 933 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 918 - -
Apr1g1916 933 Gene3D Phosphorylase Kinase; domain 1 578 682 - -
Apr1g1916 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 14 918 - -
Apr1g1916 933 Pfam Protein kinase domain 609 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1916 933 Gene3D Transferase(Phosphotransferase) domain 1 683 896 - -
Apr1g1916 933 ProSiteProfiles Protein kinase domain profile. 607 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1916 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Apr1g1916 933 MobiDBLite consensus disorder prediction 908 933 - -
Apr1g1916 933 SUPERFAMILY L domain-like 50 408 - -
Apr1g1916 933 SMART serkin_6 607 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1916 933 Gene3D Ribonuclease Inhibitor 182 433 IPR032675 -
Apr1g1916 933 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Apr1g1916 933 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Apr1g1916 933 CDD STKc_IRAK 613 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1916 Apr-Chr1 28720764 28727464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1916 1 932 Receptor kinase-like Gene Family AT5G49760 51.979 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Apr1g1916 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1916 - - gmx:100810323 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2001 9 28460327 28467211 Apr1g1916 1 28720764 28727464 PCT