Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1915 ATGGCTGAAAGAATTCTAGTATTCCTACTATTCATTTTCAGTTATTCGTTGGTTGCAATAGCAAGAACAGCAATTAATGATATCTCAGCTCTGACAGTTATAAGGAATGAGTGGCAGAACACACCACCTACTTGGGTGGGCTCCGATCCTTGTGGTGAATCTGGTGACAGTTGGGATGGAATTTATTGTACCAATGGACGTGTTACTTCCATATCATTAGCTAGCACGGGTTTGTCTGGCCAGCTTCCTTCAGAAATTGGATCACTGTCTGAATTGGTGTATTTGGATCTGTCTTACAATACAAATTTAACCGGAACACTTGTTAGTGAAATTGGAAACTTGAAAAAGCTGACAAACTTAGCTCTTATTGGTTGTGGTTTCTATGGTCCTATCCCAGATACAATAGGAAATCTACAACGGCTTAAGTTCTTATCTTTAAATTCTAATAGCTTCAGCGGGCCCATTCCACCTTCAATTGGTAATCTGTCAAATATCAATTGGCTAGACTTCTCTCAAAACCAGCTTGATGGGCCCATTCCAATATCTAATGGAACTACTCCTGGTCTTGATTTGTTGGTCAATGCAGGGCACTTTCATTTTGGCGGGAATATGCTTTCAGACAATATTCCTTCTCAGCTTTTTAGCTCGAAAATGACTCTAAAACATGTGCTTTTTGAGCACAACAAATTTACTGGCAGCATTCCATCAACACTTGGACTGGTCCAGACTCTGGAGGTGGTGCGTTTAGATTCTAATTTTTTAACTGGACCTGTGCCTCTGAACATTAACAATCTTACAAACCTTGAGGATTTGCTCCTGTCCAACAATCGCCTATCTGGTCCCATGCCAAACCTCACTGGAATGAATGCCCTTAACAACCTGGATATGAGCAATAATAGTTTTGATCCATCAGATTTTCCATCGTGGTTATCAACTCTACCGTTTCTGACAGCAATAATAATGGAAAATACGAAACTTCAAGGAGGCATTCCTGTTTCTTTGTTTGAGCTGGGACAGTTACAGACAGTGGTGCTGAAAAATAACCTGCTAAATGGCACTTTAGATATTGGTACAGCAATCAGCAACCAACTGGAACTCATTGATCTGCAGGGGAATTTAATCGGAAAATTTGATCCACAAGTTGATATCTCCAAAGTGGAGATAATACTTGTGGATAATCCAGTTTGCCGAGAAACAGGAATCGTAAAATCTTATTGCTCCACTGGAAAATCCAATGATTCAGATTTAACACCACTAAATAACTGTGTGCATGTTGCTTGCAACTCATCAGATCAGATATTAAGTCCCAACTGCAAATGTGCATACCCATATACAGGAACTTTTACTCTCAGAGCTCCTTACTTCTCAGGCTTGGGAAACAGTACTCTCTATGAAATCCTGGATAAATCTATGACGAGCATTTTTCAACTGTATGATCAACCTGTGGATTCAGTTAATATAAGCAATCCAAGGAAGGATATATTTCAGTATATTGATTTGACTTTACAAGTGTTTCCATCAGGCCAAGAACGTTTCAATAGAACAGCAATTTCTAGGGTAGGCCTCATGCTTAGCAACCAGGAATATTCACCTCCCAAAGGTTATGGTTTTGGACCATATTCTTTTATTGGTGATGTGTATGAACACTTTATAGATGATTCAGGTCCTGCGGCAAATGGTAAATCTTCAAACATTGGCATCATAGCTGGAGCTGCTGCTGGTGGTGCTGTCCTAGTGGTGTTATTACTCTTTGCAAGTGTTTATGGTTTCAGACAAAAGAAAAATGCAAAAAAAGCAACTGGGAAAAGCATTTCTTTTGAACAATGGGATCCGGATGAGAGCAATAGTAGTGTCCCACAGTTAAAAGGAGCAAGGCGCTTCACTTTTGAAGAGATACAGAACTTCACCAAAAACTTCTCACTAGGCAATAACATAGGATCAGGTGGTTATGGGAAGGTTTATAGGGGAACTCTTCCCAATGGACAACTAATTGCTGTAAAACGAGCTCAAAAGGAATCTGTGCAAGGAGGGTTGGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGTCTTATCGGTTTCTGCTTTGAGCAAGGAGAACAAATGTTGGTCTATGAGTATATTGCAAACGGTACTTTGAAGGATACTCTTTCAGGGAGATCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAATAGCCCTCGGTGCTGCGAGGGGACTGGATTATCTGCATGAACTTGCCAATCCTCCTATCATACATAGGGACATCAAATCCACTAACATTTTGCTGGATGAGCGCTTGAATGCTAAAGTATCTGATTTTGGTCTCTCCAAGCCGTTGGGTGATGGTGCAAAAGGTTATATTACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCGGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTGATAACTGCAAGAAGACCAATAGAGAGAGGGAAATACATTGTTAAAGTGGTTAAGAATGCTATTGACAACACAAAGGAATTCTATGGTCTTAAGGAAATTATTGATCCAGCTATTGATTTGGGGACAACAATTAGTGGTTTTGAGAAGTTTGTGGATCTTGCAATGCAATGTGTTGAAGAGTCAAGTTCTAGCAGGCCTTCAATGAATTATGCGGTGAAAGAAATTGAAAACATGTTGCAATTGGCTGGTTCAAACCCAAATGCTGAATCAGCATCCACTTCATCTAGTTATAATGTAAGTAAAGGGAGTTCCCTTCACCCTTATGATAATGAATACTTTGACTCAAGTGTGGTACTTCCACGTCCATAA 2868 0.3978 MAERILVFLLFIFSYSLVAIARTAINDISALTVIRNEWQNTPPTWVGSDPCGESGDSWDGIYCTNGRVTSISLASTGLSGQLPSEIGSLSELVYLDLSYNTNLTGTLVSEIGNLKKLTNLALIGCGFYGPIPDTIGNLQRLKFLSLNSNSFSGPIPPSIGNLSNINWLDFSQNQLDGPIPISNGTTPGLDLLVNAGHFHFGGNMLSDNIPSQLFSSKMTLKHVLFEHNKFTGSIPSTLGLVQTLEVVRLDSNFLTGPVPLNINNLTNLEDLLLSNNRLSGPMPNLTGMNALNNLDMSNNSFDPSDFPSWLSTLPFLTAIIMENTKLQGGIPVSLFELGQLQTVVLKNNLLNGTLDIGTAISNQLELIDLQGNLIGKFDPQVDISKVEIILVDNPVCRETGIVKSYCSTGKSNDSDLTPLNNCVHVACNSSDQILSPNCKCAYPYTGTFTLRAPYFSGLGNSTLYEILDKSMTSIFQLYDQPVDSVNISNPRKDIFQYIDLTLQVFPSGQERFNRTAISRVGLMLSNQEYSPPKGYGFGPYSFIGDVYEHFIDDSGPAANGKSSNIGIIAGAAAGGAVLVVLLLFASVYGFRQKKNAKKATGKSISFEQWDPDESNSSVPQLKGARRFTFEEIQNFTKNFSLGNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESVQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLVYEYIANGTLKDTLSGRSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKNAIDNTKEFYGLKEIIDPAIDLGTTISGFEKFVDLAMQCVEESSSSRPSMNYAVKEIENMLQLAGSNPNAESASTSSSYNVSKGSSLHPYDNEYFDSSVVLPRP* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1915 955 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 946 - -
Apr1g1915 955 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 946 - -
Apr1g1915 955 MobiDBLite consensus disorder prediction 916 943 - -
Apr1g1915 955 MobiDBLite consensus disorder prediction 916 938 - -
Apr1g1915 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Apr1g1915 955 Gene3D Ribonuclease Inhibitor 286 432 IPR032675 -
Apr1g1915 955 ProSiteProfiles Protein kinase domain profile. 639 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1915 955 Pfam Protein kinase domain 641 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1915 955 Gene3D Phosphorylase Kinase; domain 1 609 714 - -
Apr1g1915 955 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Apr1g1915 955 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Apr1g1915 955 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Apr1g1915 955 SUPERFAMILY Protein kinase-like (PK-like) 625 931 IPR011009 -
Apr1g1915 955 SMART serkin_6 639 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1915 955 Gene3D Transferase(Phosphotransferase) domain 1 715 934 - -
Apr1g1915 955 CDD STKc_IRAK 645 911 - -
Apr1g1915 955 SUPERFAMILY L domain-like 49 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1915 Apr-Chr1 28709983 28717903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1915 6 953 Receptor kinase-like Gene Family AT5G49760 54.995 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Apr1g1915 Pkinase 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1915 - - gmx:100782366 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2002 9 28470846 28477769 Apr1g1915 1 28709983 28717903 PCT