Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1900 ATGATATTTAGAGTTCATGGTCAGCACATAGATTGTGGAAACAGCACAATGGATCACGGCAATGAAGGAAACAGTCTCACCAACAATTCTAATCTCACCTCAAAACAACGTTTACGGTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGTTTGACCATTTACCATGTCAAAAGCCATTTACAGAAATACAGACTAGCAAAATACCTACCAGACTCCTCATCTGATGAAGGGAAAAAAGCTGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTTGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATATCTGAAAAAAATAATTGAAGAGCAACAGCGGCTAAGTGGTGTTCTTTCAGAGGCACCTGGCACTGGTGTTGCAGCCTTGGATTCAGGGGATGTGTGCCAGGAACCTGATAATAAGACTGACCCGGCAACCCCTGACCCAGAAAAAGCTGCTAAAGAGCGTGCCCCAGCAAAGAGTCTTTCAATTGAATCTTTTTCATCCCATCATGAACCAATGACACCAGATTCTGGTTGCCATGTTGGTTCCCCTGCTGACAGTCCTAAAGGGGAGAGATCAACCAAGAAGCAACGAGTAAGCATGGAGGGAGCGTATTCTAAACCTGACATGGTGCTTCCGCATCAGATACTGGAGTCAAGCATGTCATCATACCAGCAGCCAAACTCTGTTTTCCTTAGCCATGATCAATTTGATCCTTCTTTGGGTATATCTACCAGAAATGGTGAGGAATTGGAGAAGGTTGGTGGCAACAATCTGTGA 948 0.4494 MIFRVHGQHIDCGNSTMDHGNEGNSLTNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGTGVAALDSGDVCQEPDNKTDPATPDPEKAAKERAPAKSLSIESFSSHHEPMTPDSGCHVGSPADSPKGERSTKKQRVSMEGAYSKPDMVLPHQILESSMSSYQQPNSVFLSHDQFDPSLGISTRNGEELEKVGGNNL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1900 315 MobiDBLite consensus disorder prediction 95 118 - -
Apr1g1900 315 MobiDBLite consensus disorder prediction 289 315 - -
Apr1g1900 315 Gene3D - 34 93 - -
Apr1g1900 315 MobiDBLite consensus disorder prediction 174 263 - -
Apr1g1900 315 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Apr1g1900 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Apr1g1900 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 92 IPR017930 -
Apr1g1900 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 307 IPR044848 GO:0003700
Apr1g1900 315 Pfam MYB-CC type transfactor, LHEQLE motif 122 168 IPR025756 -
Apr1g1900 315 MobiDBLite consensus disorder prediction 198 213 - -
Apr1g1900 315 Pfam Myb-like DNA-binding domain 38 88 IPR001005 -
Apr1g1900 315 MobiDBLite consensus disorder prediction 95 112 - -
Apr1g1900 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 5 307 - -
Apr1g1900 315 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1900 Apr-Chr1 28601982 28606456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1900 70 315 G2-like Transcription Factor Family AT2G01060 63.813 1.28e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr1g1900 Myb_DNA-binding 2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1900 - - gmx:100786925 532.332