Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1899 ATGTATCCCAGATTGATACACCCCCATGATGGGATTGTGGTGCAGGAAGATATGCAAGGTGCTTCTGCTGCTGCTACTGCTGCTTCAAACCTCTCTCACAATCACAAAGGAGACCCATGTCTTGTTTTAACGGCTGATCCTAAACCTCGCCTTCGTTGGACTCAGGACCTTCATGAACGGTTTGTTGATGCCGTCACACAACTTGGGGGTGCTAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGGCTCGGTAAGCAATCTGGAAAAGATATGGGTGAGGGATGCAAAGATGGTTCATATCTCTTAGAAAGCCCTGGCACTGATAACTCTTCTCCAAAGTTGCCAACTTCTGATACAAATGAGGGTTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGCAAACTACATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCAGAGAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTCATTGGTGCTACAGTTATAGACACAGACAGCCAAAAGTTTCAAGGAATTGGAAGTAAAGCACCAAGAGGTTCCACGGTTGATCCTCTTGGTTTTTTCTCCTTGCCATCTACTGAGGTGGCTGGAGTGAATGTCGCAGAAGAAGAAATACCACCTAGTCTTCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGCTTAACCTCACATGAGAGTTCTGGAGGATTGACCTTAGAAGGGTCTCCTGGTGGCGGAAAAAGGAGGATGCTGGGCATGGACTCTATGGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAAGCTATCAATGTAGCCCAAGGTAATCATCCTCAAGGAATAACAAGGTATGGTATGTAG 960 0.4552 MYPRLIHPHDGIVVQEDMQGASAAATAASNLSHNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEGCKDGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGSTVDPLGFFSLPSTEVAGVNVAEEEIPPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNHPQGITRYGM* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1899 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 319 IPR044848 GO:0003700
Apr1g1899 319 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 319 - -
Apr1g1899 319 MobiDBLite consensus disorder prediction 250 268 - -
Apr1g1899 319 MobiDBLite consensus disorder prediction 242 281 - -
Apr1g1899 319 Pfam Myb-like DNA-binding domain 51 101 IPR001005 -
Apr1g1899 319 MobiDBLite consensus disorder prediction 122 137 - -
Apr1g1899 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Apr1g1899 319 MobiDBLite consensus disorder prediction 106 138 - -
Apr1g1899 319 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Apr1g1899 319 Pfam MYB-CC type transfactor, LHEQLE motif 143 188 IPR025756 -
Apr1g1899 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Apr1g1899 319 Gene3D - 47 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1899 Apr-Chr1 28588695 28593703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1899 34 261 G2-like Transcription Factor Family AT3G24120 47.718 1.14e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr1g1899 Myb_DNA-binding 5.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1899 - - gmx:100782369 587.03