Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1880 ATGTCAAAGGAAAAGGGTGATGAGTGTTTGCAAAACGATTTCAATGAAGAAACCGCAAGTTGCACATGCGGTTTCATTGGATTCAGGAGAAACCAAGTGTTTGATTGCAGCCAAAGCTGCAACAACAGGGAGATAAGTAATGTAAATGAAGATTCAGAGGAGCTATTTGAGATCAATCTCAAGGAGCCATTGGATACAATATCAGAAGACTGTGAGAGCAGTGTGTTCTCTTTTGATATTCACAACCACAAGGATATTGTTCATGTGGCAGTGGACCATGCTGGAGAATCAAGCATGGAAGCACTTTTATGGACTTTGAAACATGCTGTCACACCCTCTACTACTGTTTGTCTTATACATATTTTTCCTGAAATTAGGCTCATCCCAAGTCCATTTGGAAAAATTCCAAGGAGTCATGTAAAACCAGAGTATGTTGACTTTTACTTGGCTCAAAAGAAAGGCCAGAGGAAACTACTCCTTCAAAGGTTCATTGACATATGCATTGATTCAAAGGTAAATGTGGAGGTGTTGCTCATCGAGGATAACAATGTTGCCAAAGCCATAGTAGACCTTGTTAATGATCTTAGCATAAGGAAATTGGTGATTGGAATTACCAAATATACTTTAAGAAGAAGAAATGCCATAGCAGATAAGGTCCTCAAGAATGCACCCGAAATCTGTGATGTTAAAATAATATGCAATGGAAAGGAAGTGATTGATCAGATGATTGGTTGCACTTCATCATACTCCTCTGACATTAGCAGTTCCAGAGTTTCACAAGAAGGAGATGAATCCCATCGTTTTGTTCCTCTTATACGTTTTATCCCCAATCCTATATGTTTATTTAGACCCGGATTTTAA 861 0.3856 MSKEKGDECLQNDFNEETASCTCGFIGFRRNQVFDCSQSCNNREISNVNEDSEELFEINLKEPLDTISEDCESSVFSFDIHNHKDIVHVAVDHAGESSMEALLWTLKHAVTPSTTVCLIHIFPEIRLIPSPFGKIPRSHVKPEYVDFYLAQKKGQRKLLLQRFIDICIDSKVNVEVLLIEDNNVAKAIVDLVNDLSIRKLVIGITKYTLRRRNAIADKVLKNAPEICDVKIICNGKEVIDQMIGCTSSYSSDISSSRVSQEGDESHRFVPLIRFIPNPICLFRPGF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1880 286 CDD STK_N 86 235 - -
Apr1g1880 286 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 12 283 - -
Apr1g1880 286 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 89 231 - -
Apr1g1880 286 Gene3D HUPs 78 239 IPR014729 -
Apr1g1880 286 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 12 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1880 Apr-Chr1 28401401 28403242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1880 87 235 U-box Gene Family AT2G45910 29.677 2.67e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1880 - - gmx:100818837 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2022 9 28628680 28629861 Apr1g1880 1 28401401 28403242 PCT